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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033327 through 18771 annotations produced 1 hits



PGRP-SC1a /// PGRP-SC1b (PGRP-SC1a /// PGRP-SC1b):

Annotation Number : CG8577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033327 /// FBgn0043576
Gbrowse : chr2R:4600948-4601587 (+) // 100.0 // /// chr2R:4597235-4597821 (+) // 91.39 //
Probeset : 1627986_s_at
Accessions : protein= NP_610407; /// NP_610409;, nucleotide= NM_136563; /// NM_136565;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0033327 /// FBgn0043576.
BioGrid reports that CG8577 interacts with CG9184 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.00Down
Head65 162 of 4 0.10Down
Eye4 10 of 4 0.00Down
Thoracicoabdominal ganglion11 20 of 4 0.00Down
Salivary gland10 30 of 4 0.01Down
Crop10 20 of 4 0.00Down
Midgut5128 254 of 4 4.20Up
Tubule8 00 of 4 0.00Down
Hindgut5 00 of 4 0.00Down
Heart2 10 of 4 0.00Down
Fat body7 50 of 4 0.01Down
Ovary3 00 of 4 0.00Down
Testis7 20 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca18 50 of 4 0.02Down
Mated spermatheca17 20 of 4 0.01Down
Adult carcass13 40 of 4 0.00Down
Larval CNS2 10 of 4 0.00Down
Larval Salivary gland15 40 of 4 0.01Down
Larval midgut4503 564 of 4 3.72Up
Larval tubule9 30 of 4 0.00Down
Larval hindgut6 10 of 4 0.01Down
Larval fat body84 571 of 4 0.10Down
Larval trachea2 10 of 4 0.00Down
Larval carcass11 30 of 4 0.01Down
S2 cells (growing)3 00 of 4 0.00Down
Whole fly1209 2574 of 4

Looking for FBgn0033327. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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