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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033339 through 18771 annotations produced 1 hits



sec31 (sec31):

Annotation Number : CG8266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033339
Gbrowse : chr2R:4781128-4786289 (+) // 100.0 //
Probeset : 1630055_a_at
Accessions : protein= NP_610414; /// NP_724716;, nucleotide= NM_136570; /// NM_165630;
Pathway : 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred
FlyMine data for FBgn0033339.
BioGrid reports that CG8266 interacts with CG8893 .
TRiP has 1 RNAi stocks for FBgn0033339 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033339 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 114 of 4 1.00None
Head250 84 of 4 0.90None
Eye186 34 of 4 0.69Down
Thoracicoabdominal ganglion307 154 of 4 1.10None
Salivary gland1614 244 of 4 5.98Up
Crop243 24 of 4 0.90None
Midgut262 94 of 4 1.00None
Tubule228 144 of 4 0.80Down
Hindgut219 54 of 4 0.80Down
Heart238 114 of 4 0.88None
Fat body342 384 of 4 1.27Up
Ovary328 94 of 4 1.20Up
Testis213 54 of 4 0.80Down
Male accessory glands1266 624 of 4 4.70Up
Virgin spermatheca580 244 of 4 2.15Up
Mated spermatheca705 524 of 4 2.61Up
Adult carcass317 114 of 4 1.20Up
Larval CNS291 94 of 4 1.08None
Larval Salivary gland2849 514 of 410.55Up
Larval midgut422 164 of 4 1.56Up
Larval tubule341 144 of 4 1.30Up
Larval hindgut511 174 of 4 1.89Up
Larval fat body681 434 of 4 2.50Up
Larval trachea489 574 of 4 1.81Up
Larval carcass502 224 of 4 1.86Up
S2 cells (growing)942 314 of 4 3.49Up
Whole fly270 144 of 4

Looking for FBgn0033339. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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