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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033340 through 18771 annotations produced 1 hits



(CG13751):

Annotation Number : CG13751
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033340
Gbrowse : chr2R:4787745-4788130 (+) // 100.0 //
Probeset : 1627782_at
Accessions : protein= NP_610416;, nucleotide= NM_136572;
FlyMine data for FBgn0033340.
TRiP has 1 RNAi stocks for FBgn0033340 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033340 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 ± 64 of 4 1.40Up
Head210 ± 124 of 4 1.60Up
Eye426 ± 174 of 4 3.23Up
Thoracicoabdominal ganglion237 ± 124 of 4 1.80Up
Salivary gland402 ± 134 of 4 3.05Up
Crop282 ± 44 of 4 2.10Up
Midgut130 ± 24 of 4 1.00None
Tubule63 ± 14 of 4 0.50Down
Hindgut248 ± 54 of 4 1.90Up
Heart296 ± 114 of 4 2.25Up
Fat body97 ± 104 of 4 0.74Down
Ovary107 ± 14 of 4 0.80Down
Testis132 ± 44 of 4 1.00None
Male accessory glands316 ± 54 of 4 2.40Up
Virgin spermatheca51 ± 24 of 4 0.39Down
Mated spermatheca57 ± 64 of 4 0.44Down
Adult carcass141 ± 44 of 4 1.10None
Larval CNS299 ± 144 of 4 2.27Up
Larval Salivary gland274 ± 74 of 4 2.08Up
Larval midgut183 ± 84 of 4 1.39Up
Larval tubule215 ± 54 of 4 1.60Up
Larval hindgut300 ± 64 of 4 2.28Up
Larval fat body183 ± 164 of 4 1.40Up
Larval trachea450 ± 114 of 4 3.41Up
Larval carcass191 ± 74 of 4 1.45Up
S2 cells (growing)596 ± 54 of 4 4.53Up
Whole fly131 ± 44 of 4

Looking for FBgn0033340. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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