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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033341 through 18771 annotations produced 1 hits



MrgBP (MrgBP):

Annotation Number : CG13746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033341
Gbrowse : chr2R:4788067-4788877 (-) // 100.0 //
Probeset : 1637735_at
Accessions : protein= NP_610417;, nucleotide= NM_136573;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0043189 // H4/H2A histone acetyltransferase complex // inf
FlyMine data for FBgn0033341.
BDGP gene expression has embryonic in situ data for CG13746: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033341 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain258 ± 74 of 4 1.60None
Head168 ± 94 of 4 1.10None
Eye246 ± 54 of 4 1.54Up
Thoracicoabdominal ganglion187 ± 104 of 4 1.20None
Salivary gland226 ± 93 of 4 1.41None
Crop161 ± 44 of 4 1.00None
Midgut116 ± 34 of 4 0.70None
Tubule143 ± 124 of 4 0.90None
Hindgut170 ± 24 of 4 1.10None
Heart145 ± 44 of 4 0.91None
Fat body87 ± 84 of 4 0.55None
Ovary219 ± 74 of 4 1.40None
Testis123 ± 64 of 4 0.80None
Male accessory glands532 ± 224 of 4 3.30Up
Virgin spermatheca47 ± 14 of 4 0.30Down
Mated spermatheca54 ± 64 of 4 0.34Down
Adult carcass133 ± 34 of 4 0.80None
Larval CNS293 ± 194 of 4 1.83Up
Larval Salivary gland428 ± 384 of 4 2.68Up
Larval midgut103 ± 34 of 4 0.65None
Larval tubule145 ± 104 of 4 0.90None
Larval hindgut148 ± 54 of 4 0.93None
Larval fat body150 ± 94 of 4 0.90None
Larval trachea300 ± 274 of 4 1.88Up
Larval carcass197 ± 104 of 4 1.23None
S2 cells (growing)289 ± 94 of 4 1.81Up
Whole fly159 ± 254 of 4

Looking for FBgn0033341. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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