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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033349 through 18771 annotations produced 1 hits



(CG8243):

Annotation Number : CG8243
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033349
Gbrowse : chr2R:4810292-4812851 (+) // 100.0 //
Probeset : 1623647_at
Accessions : protein= NP_610424;, nucleotide= NM_136580;
Interpro : 0008060 // ARF GTPase activator activity // inferred from sequence or structural similarity /// 0008060 // ARF GTPase ac
FlyMine data for FBgn0033349.
BDGP gene expression has embryonic in situ data for CG8243: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0033349 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 ± 34 of 4 0.60Down
Head172 ± 24 of 4 0.40Down
Eye241 ± 44 of 4 0.59Down
Thoracicoabdominal ganglion214 ± 84 of 4 0.50Down
Salivary gland648 ± 164 of 4 1.59Up
Crop293 ± 104 of 4 0.70Down
Midgut239 ± 54 of 4 0.60Down
Tubule359 ± 74 of 4 0.90Down
Hindgut212 ± 14 of 4 0.50Down
Heart283 ± 94 of 4 0.70Down
Fat body176 ± 114 of 4 0.43Down
Ovary715 ± 84 of 4 1.80Up
Testis152 ± 104 of 4 0.40Down
Male accessory glands452 ± 124 of 4 1.10None
Virgin spermatheca382 ± 314 of 4 0.94None
Mated spermatheca389 ± 114 of 4 0.96None
Adult carcass173 ± 114 of 4 0.40Down
Larval CNS504 ± 234 of 4 1.24Up
Larval Salivary gland1162 ± 454 of 4 2.86Up
Larval midgut321 ± 24 of 4 0.79Down
Larval tubule582 ± 364 of 4 1.40Up
Larval hindgut344 ± 74 of 4 0.85Down
Larval fat body214 ± 74 of 4 0.50Down
Larval trachea401 ± 344 of 4 0.99None
Larval carcass377 ± 104 of 4 0.93None
S2 cells (growing)572 ± 34 of 4 1.41Up
Whole fly407 ± 154 of 4

Looking for FBgn0033349. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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