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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033350 through 18771 annotations produced 1 hits


Annotation Number : CG8237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033350
Gbrowse : chr2R:4813193-4814395 (+) // 100.0 //
Probeset : 1635281_at
Accessions : protein= NP_610425;, nucleotide= NM_136581;
FlyMine data for FBgn0033350.
BDGP gene expression has embryonic in situ data for CG8237: 10 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0033350 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 44 of 4 0.70Down
Head105 24 of 4 0.80Down
Eye153 64 of 4 1.22Up
Thoracicoabdominal ganglion106 44 of 4 0.80Down
Salivary gland301 114 of 4 2.40Up
Crop90 34 of 4 0.70Down
Midgut145 64 of 4 1.20None
Tubule108 14 of 4 0.90Down
Hindgut76 14 of 4 0.60Down
Heart124 54 of 4 0.99None
Fat body115 84 of 4 0.92None
Ovary137 24 of 4 1.10None
Testis426 144 of 4 3.40Up
Male accessory glands744 304 of 4 5.90Up
Virgin spermatheca205 54 of 4 1.64Up
Mated spermatheca221 94 of 4 1.77Up
Adult carcass87 14 of 4 0.70Down
Larval CNS103 84 of 4 0.83Down
Larval Salivary gland545 264 of 4 4.35Up
Larval midgut99 24 of 4 0.79Down
Larval tubule179 44 of 4 1.40Up
Larval hindgut99 44 of 4 0.79Down
Larval fat body208 174 of 4 1.70Up
Larval trachea147 74 of 4 1.18Up
Larval carcass94 04 of 4 0.75Down
S2 cells (growing)173 44 of 4 1.38Up
Whole fly125 64 of 4

Looking for FBgn0033350. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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