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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033351 through 18771 annotations produced 1 hits



(CG8235):

Annotation Number : CG8235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033351
Gbrowse : chr2R:4814517-4815605 (-) // 100.0 //
Probeset : 1626469_at
Accessions : protein= NP_610426;, nucleotide= NM_136582;
Pathway : 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from sequence or structural similarity
Interpro : 0000049 // tRNA binding // inferred from electronic annotation
FlyMine data for FBgn0033351.
BDGP gene expression has embryonic in situ data for CG8235: 10 pix of staining in 12 body parts.
Homophila reports that CG8235 is a close match (2e-43) to human gene CMTDIC;TYRRS;YARS;YRS;YTS (NP_003671), a gene associated with Charcot-Marie-Tooth disease, dominant intermediate C, 608323 (3).
BioGrid reports that CG8235 interacts with CG9418 CG9951 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 54 of 4 0.30Down
Head182 ± 94 of 4 0.60Down
Eye223 ± 84 of 4 0.71Down
Thoracicoabdominal ganglion135 ± 34 of 4 0.40Down
Salivary gland278 ± 164 of 4 0.89None
Crop234 ± 44 of 4 0.80Down
Midgut166 ± 34 of 4 0.50Down
Tubule318 ± 204 of 4 1.00None
Hindgut153 ± 34 of 4 0.50Down
Heart215 ± 174 of 4 0.69Down
Fat body168 ± 214 of 4 0.54Down
Ovary453 ± 74 of 4 1.50Up
Testis81 ± 54 of 4 0.30Down
Male accessory glands268 ± 94 of 4 0.90None
Virgin spermatheca228 ± 154 of 4 0.73Down
Mated spermatheca282 ± 114 of 4 0.90None
Adult carcass181 ± 64 of 4 0.60Down
Larval CNS289 ± 114 of 4 0.93None
Larval Salivary gland561 ± 354 of 4 1.80Up
Larval midgut159 ± 114 of 4 0.51Down
Larval tubule229 ± 44 of 4 0.70Down
Larval hindgut246 ± 84 of 4 0.79None
Larval fat body213 ± 164 of 4 0.70Down
Larval trachea468 ± 594 of 4 1.50Up
Larval carcass240 ± 284 of 4 0.77None
S2 cells (growing)291 ± 94 of 4 0.93None
Whole fly312 ± 234 of 4

Looking for FBgn0033351. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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