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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033352 through 18771 annotations produced 2 hits



/// CG4875 (CG8232 /// Rcp):

Annotation Number : CG4875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030801
Gbrowse : chrX:16778719-16779897 (+) // 100.0 //
Probeset : 1623805_at
Accessions : protein= NP_573175; /// NP_996493;, nucleotide= NM_132947; /// NM_206770;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0030801.
TRiP has 1 RNAi stocks for FBgn0030801 available for purchase.
VDRC has 5 RNAi stocks for FBgn0030801 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 24 of 4 1.20None
Head53 34 of 4 0.70None
Eye91 14 of 4 1.12None
Thoracicoabdominal ganglion94 14 of 4 1.10None
Salivary gland71 53 of 4 0.87None
Crop56 44 of 4 0.70None
Midgut66 34 of 4 0.80None
Tubule27 14 of 4 0.30Down
Hindgut40 14 of 4 0.50Down
Heart48 34 of 4 0.59Down
Fat body34 04 of 4 0.42Down
Ovary164 34 of 4 2.00Up
Testis17 14 of 4 0.20Down
Male accessory glands75 44 of 4 0.90None
Virgin spermatheca40 24 of 4 0.49Down
Mated spermatheca39 14 of 4 0.48Down
Adult carcass46 34 of 4 0.60Down
Larval CNS109 34 of 4 1.33None
Larval Salivary gland78 44 of 4 0.95None
Larval midgut44 34 of 4 0.54Down
Larval tubule53 34 of 4 0.70None
Larval hindgut46 04 of 4 0.57Down
Larval fat body46 24 of 4 0.60Down
Larval trachea106 74 of 4 1.29None
Larval carcass60 54 of 4 0.74None
S2 cells (growing)75 34 of 4 0.91None
Whole fly82 104 of 4



(CG8232):

Annotation Number : CG8232
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033352
Gbrowse : chr2R:4815678-4820601 (+) // 100.0 //
Probeset : 1636801_at
Accessions : protein= NP_610427;, nucleotide= NM_136583;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity /
FlyMine data for FBgn0033352.
BioGrid reports that CG8232 interacts with CG8781 CG8893 CG8978 CG9042 CG9335 CG9769 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain239 24 of 4 1.10Up
Head222 164 of 4 1.10None
Eye211 14 of 4 1.02None
Thoracicoabdominal ganglion229 64 of 4 1.10Up
Salivary gland688 174 of 4 3.30Up
Crop379 54 of 4 1.80Up
Midgut286 74 of 4 1.40Up
Tubule478 274 of 4 2.30Up
Hindgut346 74 of 4 1.70Up
Heart179 44 of 4 0.86Down
Fat body233 184 of 4 1.12None
Ovary294 54 of 4 1.40Up
Testis92 34 of 4 0.40Down
Male accessory glands321 34 of 4 1.50Up
Virgin spermatheca253 64 of 4 1.21Up
Mated spermatheca194 84 of 4 0.93None
Adult carcass203 104 of 4 1.00None
Larval CNS388 114 of 4 1.86Up
Larval Salivary gland777 264 of 4 3.73Up
Larval midgut352 254 of 4 1.69Up
Larval tubule963 204 of 4 4.60Up
Larval hindgut396 304 of 4 1.90Up
Larval fat body283 184 of 4 1.40Up
Larval trachea312 504 of 4 1.50Up
Larval carcass259 204 of 4 1.25None
S2 cells (growing)373 114 of 4 1.79Up
Whole fly208 24 of 4

Looking for FBgn0033352. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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