FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033352 through 18771 annotations produced 2 hits

(CG8232):

Annotation Number : CG8232
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033352
Gbrowse : chr2R:4815678-4820601 (+) // 100.0 //
Probeset : 1636801_at
Accessions : protein= NP_610427;, nucleotide= NM_136583;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity /
FlyMine data for FBgn0033352.
BioGrid reports that CG8232 interacts with CG8781 CG8893 CG8978 CG9042 CG9335 CG9769 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	239 ± 2	4 of 4	1.10	Up
Head	222 ± 16	4 of 4	1.10	None
Eye	211 ± 1	4 of 4	1.02	None
Thoracicoabdominal ganglion	229 ± 6	4 of 4	1.10	Up
Salivary gland	688 ± 17	4 of 4	3.30	Up
Crop	379 ± 5	4 of 4	1.80	Up
Midgut	286 ± 7	4 of 4	1.40	Up
Tubule	478 ± 27	4 of 4	2.30	Up
Hindgut	346 ± 7	4 of 4	1.70	Up
Heart	179 ± 4	4 of 4	0.86	Down
Fat body	233 ± 18	4 of 4	1.12	None
Ovary	294 ± 5	4 of 4	1.40	Up
Testis	92 ± 3	4 of 4	0.40	Down
Male accessory glands	321 ± 3	4 of 4	1.50	Up
Virgin spermatheca	253 ± 6	4 of 4	1.21	Up
Mated spermatheca	194 ± 8	4 of 4	0.93	None
Adult carcass	203 ± 10	4 of 4	1.00	None
Larval CNS	388 ± 11	4 of 4	1.86	Up
Larval Salivary gland	777 ± 26	4 of 4	3.73	Up
Larval midgut	352 ± 25	4 of 4	1.69	Up
Larval tubule	963 ± 20	4 of 4	4.60	Up
Larval hindgut	396 ± 30	4 of 4	1.90	Up
Larval fat body	283 ± 18	4 of 4	1.40	Up
Larval trachea	312 ± 50	4 of 4	1.50	Up
Larval carcass	259 ± 20	4 of 4	1.25	None
S2 cells (growing)	373 ± 11	4 of 4	1.79	Up
Whole fly	208 ± 2	4 of 4

/// CG4875 (CG8232 /// Rcp):

Annotation Number : CG4875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030801
Gbrowse : chrX:16778719-16779897 (+) // 100.0 //
Probeset : 1623805_at
Accessions : protein= NP_573175; /// NP_996493;, nucleotide= NM_132947; /// NM_206770;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0030801.
TRiP has 1 RNAi stocks for FBgn0030801 available for purchase.
VDRC has 5 RNAi stocks for FBgn0030801 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	96 ± 2	4 of 4	1.20	None
Head	53 ± 3	4 of 4	0.70	None
Eye	91 ± 1	4 of 4	1.12	None
Thoracicoabdominal ganglion	94 ± 1	4 of 4	1.10	None
Salivary gland	71 ± 5	3 of 4	0.87	None
Crop	56 ± 4	4 of 4	0.70	None
Midgut	66 ± 3	4 of 4	0.80	None
Tubule	27 ± 1	4 of 4	0.30	Down
Hindgut	40 ± 1	4 of 4	0.50	Down
Heart	48 ± 3	4 of 4	0.59	Down
Fat body	34 ± 0	4 of 4	0.42	Down
Ovary	164 ± 3	4 of 4	2.00	Up
Testis	17 ± 1	4 of 4	0.20	Down
Male accessory glands	75 ± 4	4 of 4	0.90	None
Virgin spermatheca	40 ± 2	4 of 4	0.49	Down
Mated spermatheca	39 ± 1	4 of 4	0.48	Down
Adult carcass	46 ± 3	4 of 4	0.60	Down
Larval CNS	109 ± 3	4 of 4	1.33	None
Larval Salivary gland	78 ± 4	4 of 4	0.95	None
Larval midgut	44 ± 3	4 of 4	0.54	Down
Larval tubule	53 ± 3	4 of 4	0.70	None
Larval hindgut	46 ± 0	4 of 4	0.57	Down
Larval fat body	46 ± 2	4 of 4	0.60	Down
Larval trachea	106 ± 7	4 of 4	1.29	None
Larval carcass	60 ± 5	4 of 4	0.74	None
S2 cells (growing)	75 ± 3	4 of 4	0.91	None
Whole fly	82 ± 10	4 of 4

Looking for FBgn0033352. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720