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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033354 through 18771 annotations produced 1 hits



(CG13745):

Annotation Number : CG13745
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033354
Gbrowse : chr2R:4822121-4827258 (-) // 100.0 //
Probeset : 1623041_at
Accessions : protein= NP_610429;, nucleotide= NM_136585;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0033354.
Homophila reports that CG13745 is a close match (5e-18) to human gene FANCI;KIAA1794 (NP_060663), a gene associated with Fanconi anemia, complementation group I, 608053 (3).
BioGrid reports that CG13745 interacts with CG1034 CG7948 CG31811 CG6521 CG17309 CG32169 CG10610 CG9256 CG17290 .
TRiP has 1 RNAi stocks for FBgn0033354 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033354 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.40Down
Head3 ± 10 of 4 0.30Down
Eye3 ± 00 of 4 0.26Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.30Down
Salivary gland5 ± 10 of 4 0.39Down
Crop7 ± 10 of 4 0.50Down
Midgut2 ± 10 of 4 0.10Down
Tubule8 ± 11 of 4 0.60Down
Hindgut6 ± 10 of 4 0.40Down
Heart3 ± 10 of 4 0.24Down
Fat body5 ± 41 of 4 0.36Down
Ovary36 ± 34 of 4 2.70Up
Testis22 ± 14 of 4 1.60Up
Male accessory glands146 ± 134 of 410.70Up
Virgin spermatheca2 ± 10 of 4 0.20Down
Mated spermatheca5 ± 00 of 4 0.37Down
Adult carcass4 ± 20 of 4 0.30Down
Larval CNS44 ± 04 of 4 3.25Up
Larval Salivary gland4 ± 10 of 4 0.33Down
Larval midgut9 ± 31 of 4 0.70None
Larval tubule5 ± 10 of 4 0.40Down
Larval hindgut14 ± 14 of 4 1.05None
Larval fat body13 ± 22 of 4 1.00None
Larval trachea16 ± 42 of 4 1.19None
Larval carcass10 ± 11 of 4 0.76None
S2 cells (growing)49 ± 14 of 4 3.62Up
Whole fly13 ± 04 of 4

Looking for FBgn0033354. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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