FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033356 through 18771 annotations produced 4 hits

(CG8229):

Annotation Number : CG8229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033356
Gbrowse : chr2R:4835611-4838609 (-) // 100.0 //
Probeset : 1635978_at
Accessions : protein= NP_610432; /// NP_724730;, nucleotide= NM_136588; /// NM_165638;
FlyMine data for FBgn0033356.
BDGP gene expression has embryonic in situ data for CG8229: 21 pix of staining in 11 body parts.
BioGrid reports that CG8229 interacts with CG8368 CG8696 .
VDRC has 1 RNAi stocks for FBgn0033356 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1993 ± 17	4 of 4	2.30	Up
Head	1462 ± 65	4 of 4	1.70	Up
Eye	2068 ± 140	4 of 4	2.40	Up
Thoracicoabdominal ganglion	2533 ± 43	4 of 4	2.90	Up
Salivary gland	647 ± 18	4 of 4	0.75	Down
Crop	1349 ± 29	4 of 4	1.60	Up
Midgut	391 ± 10	4 of 4	0.50	Down
Tubule	2754 ± 157	4 of 4	3.20	Up
Hindgut	1217 ± 21	4 of 4	1.40	Up
Heart	1657 ± 44	4 of 4	1.92	Up
Fat body	779 ± 76	4 of 4	0.90	None
Ovary	741 ± 17	4 of 4	0.90	Down
Testis	504 ± 17	4 of 4	0.60	Down
Male accessory glands	343 ± 16	4 of 4	0.40	Down
Virgin spermatheca	790 ± 10	4 of 4	0.92	Down
Mated spermatheca	669 ± 35	4 of 4	0.78	Down
Adult carcass	1517 ± 45	4 of 4	1.80	Up
Larval CNS	539 ± 36	4 of 4	0.63	Down
Larval Salivary gland	247 ± 10	4 of 4	0.29	Down
Larval midgut	636 ± 40	4 of 4	0.74	Down
Larval tubule	1836 ± 36	4 of 4	2.10	Up
Larval hindgut	931 ± 54	4 of 4	1.08	None
Larval fat body	1092 ± 102	4 of 4	1.30	None
Larval trachea	330 ± 38	4 of 4	0.38	Down
Larval carcass	902 ± 32	4 of 4	1.05	None
S2 cells (growing)	316 ± 10	4 of 4	0.37	Down
Whole fly	862 ± 16	4 of 4

(CG8229):

Annotation Number : CG8229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033356
Gbrowse : chr2R:4837013-4838609 (-) // 100.0 //
Probeset : 1637300_at
Accessions : protein= NP_610432; /// NP_724730;, nucleotide= NM_136588; /// NM_165638;
FlyMine data for FBgn0033356.
BDGP gene expression has embryonic in situ data for CG8229: 21 pix of staining in 11 body parts.
BioGrid reports that CG8229 interacts with CG8368 CG8696 .
VDRC has 1 RNAi stocks for FBgn0033356 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	472 ± 4	4 of 4	3.80	Up
Head	378 ± 42	4 of 4	3.10	Up
Eye	518 ± 18	4 of 4	4.21	Up
Thoracicoabdominal ganglion	472 ± 25	4 of 4	3.80	Up
Salivary gland	51 ± 7	3 of 4	0.42	Down
Crop	229 ± 16	4 of 4	1.90	Up
Midgut	56 ± 3	4 of 4	0.50	Down
Tubule	662 ± 60	4 of 4	5.40	Up
Hindgut	145 ± 2	4 of 4	1.20	None
Heart	187 ± 7	4 of 4	1.52	Up
Fat body	361 ± 36	4 of 4	2.94	Up
Ovary	103 ± 6	4 of 4	0.80	None
Testis	52 ± 2	4 of 4	0.40	Down
Male accessory glands	194 ± 11	4 of 4	1.60	Up
Virgin spermatheca	619 ± 41	4 of 4	5.03	Up
Mated spermatheca	429 ± 30	4 of 4	3.49	Up
Adult carcass	154 ± 8	4 of 4	1.30	None
Larval CNS	65 ± 8	4 of 4	0.54	Down
Larval Salivary gland	63 ± 7	4 of 4	0.52	Down
Larval midgut	51 ± 5	4 of 4	0.42	Down
Larval tubule	341 ± 10	4 of 4	2.80	Up
Larval hindgut	80 ± 7	4 of 4	0.65	Down
Larval fat body	457 ± 54	4 of 4	3.70	Up
Larval trachea	56 ± 14	4 of 4	0.46	Down
Larval carcass	113 ± 6	4 of 4	0.92	None
S2 cells (growing)	128 ± 2	4 of 4	1.04	None
Whole fly	123 ± 11	4 of 4

(CG8229):

Annotation Number : CG8229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033356
Gbrowse : chr2R:4837013-4838609 (-) // 100.0 //
Probeset : 1639048_a_at
Accessions : protein= NP_610432; /// NP_724730;, nucleotide= NM_136588; /// NM_165638;
FlyMine data for FBgn0033356.
BDGP gene expression has embryonic in situ data for CG8229: 21 pix of staining in 11 body parts.
BioGrid reports that CG8229 interacts with CG8368 CG8696 .
VDRC has 1 RNAi stocks for FBgn0033356 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	454 ± 13	4 of 4	4.40	Up
Head	298 ± 12	4 of 4	2.90	Up
Eye	599 ± 21	4 of 4	5.81	Up
Thoracicoabdominal ganglion	342 ± 6	4 of 4	3.30	Up
Salivary gland	42 ± 6	4 of 4	0.41	Down
Crop	188 ± 9	4 of 4	1.80	Up
Midgut	35 ± 1	4 of 4	0.30	Down
Tubule	243 ± 20	4 of 4	2.40	Up
Hindgut	122 ± 3	4 of 4	1.20	None
Heart	208 ± 10	4 of 4	2.02	Up
Fat body	229 ± 40	4 of 4	2.23	Up
Ovary	79 ± 2	4 of 4	0.80	None
Testis	52 ± 5	4 of 4	0.50	Down
Male accessory glands	145 ± 6	4 of 4	1.40	Up
Virgin spermatheca	138 ± 9	4 of 4	1.34	None
Mated spermatheca	92 ± 5	4 of 4	0.90	None
Adult carcass	151 ± 7	4 of 4	1.50	Up
Larval CNS	43 ± 4	4 of 4	0.42	Down
Larval Salivary gland	32 ± 1	4 of 4	0.31	Down
Larval midgut	16 ± 3	3 of 4	0.16	Down
Larval tubule	280 ± 7	4 of 4	2.70	Up
Larval hindgut	43 ± 3	4 of 4	0.42	Down
Larval fat body	307 ± 33	4 of 4	3.00	Up
Larval trachea	79 ± 13	4 of 4	0.77	None
Larval carcass	75 ± 6	4 of 4	0.73	None
S2 cells (growing)	136 ± 5	4 of 4	1.32	None
Whole fly	103 ± 11	4 of 4

/// (CG33199 /// CG8229):

Annotation Number : CG33199
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033356 /// FBgn0053199
Gbrowse : chr2R:4836032-4838609 (-) // 100.0 //
Probeset : 1633606_s_at
Accessions : protein= NP_610432; /// NP_724730; /// NP_788287;, nucleotide= NM_136588; /// NM_165638; /// NM_176107;
FlyMine data for FBgn0033356 /// FBgn0053199.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1191 ± 45	4 of 4	3.70	Up
Head	553 ± 55	4 of 4	1.70	Up
Eye	1085 ± 47	4 of 4	3.41	Up
Thoracicoabdominal ganglion	1105 ± 51	4 of 4	3.50	Up
Salivary gland	227 ± 5	4 of 4	0.72	Down
Crop	470 ± 4	4 of 4	1.50	Up
Midgut	115 ± 5	4 of 4	0.40	Down
Tubule	291 ± 14	4 of 4	0.90	None
Hindgut	407 ± 11	4 of 4	1.30	Up
Heart	698 ± 13	4 of 4	2.19	Up
Fat body	245 ± 28	4 of 4	0.77	Down
Ovary	245 ± 6	4 of 4	0.80	Down
Testis	184 ± 13	4 of 4	0.60	Down
Male accessory glands	104 ± 1	4 of 4	0.30	Down
Virgin spermatheca	101 ± 6	4 of 4	0.32	Down
Mated spermatheca	89 ± 4	4 of 4	0.28	Down
Adult carcass	463 ± 14	4 of 4	1.50	Up
Larval CNS	191 ± 17	4 of 4	0.60	Down
Larval Salivary gland	95 ± 7	4 of 4	0.30	Down
Larval midgut	165 ± 7	4 of 4	0.52	Down
Larval tubule	562 ± 29	4 of 4	1.80	Up
Larval hindgut	262 ± 19	4 of 4	0.82	None
Larval fat body	255 ± 12	4 of 4	0.80	Down
Larval trachea	193 ± 29	4 of 4	0.61	Down
Larval carcass	281 ± 31	4 of 4	0.88	None
S2 cells (growing)	144 ± 9	4 of 4	0.46	Down
Whole fly	318 ± 7	4 of 4

Looking for FBgn0033356. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720