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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033363 through 18771 annotations produced 1 hits



(CG13744):

Annotation Number : CG13744
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033363
Gbrowse : chr2R:4902010-4904184 (-) // 100.0 //
Probeset : 1626670_at
Accessions : protein= NP_610439;, nucleotide= NM_136595;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033363.
Homophila reports that CG13744 is a close match (1e-12) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
VDRC has 3 RNAi stocks for FBgn0033363 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 21 of 4 0.80None
Head3 ± 10 of 4 0.70None
Eye4 ± 10 of 4 0.90None
Thoracicoabdominal ganglion4 ± 10 of 4 0.80None
Salivary gland14 ± 30 of 4 2.79None
Crop6 ± 00 of 4 1.20None
Midgut7 ± 10 of 4 1.50None
Tubule4 ± 00 of 4 0.90None
Hindgut4 ± 01 of 4 0.90None
Heart4 ± 10 of 4 0.77None
Fat body10 ± 71 of 4 1.98None
Ovary2 ± 00 of 4 0.50Down
Testis7 ± 11 of 4 1.30None
Male accessory glands8 ± 41 of 4 1.60None
Virgin spermatheca6 ± 00 of 4 1.17None
Mated spermatheca6 ± 00 of 4 1.25None
Adult carcass5 ± 31 of 4 1.10None
Larval CNS5 ± 11 of 4 0.94None
Larval Salivary gland16 ± 10 of 4 3.16Up
Larval midgut12 ± 23 of 4 2.41Up
Larval tubule4 ± 20 of 4 0.80None
Larval hindgut4 ± 00 of 4 0.84None
Larval fat body6 ± 00 of 4 1.10None
Larval trachea4 ± 21 of 4 0.86None
Larval carcass7 ± 11 of 4 1.40None
S2 cells (growing)2 ± 10 of 4 0.50None
Whole fly5 ± 00 of 4

Looking for FBgn0033363. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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