FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033373 through 18771 annotations produced 2 hits

/// (CG13741 /// CG8080):

Annotation Number : CG13741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033373 /// FBgn0033374
Gbrowse : chr2R:4980007-4982173 (-) // 100.0 //
Probeset : 1628731_s_at
Accessions : protein= NP_788288; /// NP_788289;, nucleotide= NM_176108; /// NM_176109;
Interpro : 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred f
FlyMine data for FBgn0033373 /// FBgn0033374.
BioGrid reports that CG13741 interacts with CG32156 CG4983 CG7697 CG7742 CG33275 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	36 ± 2	4 of 4	0.10	Down
Head	32 ± 2	4 of 4	0.10	Down
Eye	8 ± 1	2 of 4	0.03	Down
Thoracicoabdominal ganglion	13 ± 1	4 of 4	0.00	Down
Salivary gland	18 ± 1	3 of 4	0.06	Down
Crop	18 ± 2	4 of 4	0.10	Down
Midgut	28 ± 5	4 of 4	0.10	Down
Tubule	19 ± 7	3 of 4	0.10	Down
Hindgut	17 ± 1	4 of 4	0.10	Down
Heart	37 ± 4	4 of 4	0.13	Down
Fat body	69 ± 18	4 of 4	0.24	Down
Ovary	931 ± 11	4 of 4	3.20	Up
Testis	42 ± 4	4 of 4	0.10	Down
Male accessory glands	24 ± 1	4 of 4	0.10	Down
Virgin spermatheca	53 ± 8	4 of 4	0.18	Down
Mated spermatheca	27 ± 2	4 of 4	0.09	Down
Adult carcass	52 ± 6	4 of 4	0.20	Down
Larval CNS	19 ± 4	4 of 4	0.07	Down
Larval Salivary gland	16 ± 2	4 of 4	0.06	Down
Larval midgut	43 ± 1	4 of 4	0.15	Down
Larval tubule	72 ± 4	4 of 4	0.20	Down
Larval hindgut	17 ± 1	4 of 4	0.06	Down
Larval fat body	306 ± 3	4 of 4	1.00	None
Larval trachea	7 ± 3	1 of 4	0.02	Down
Larval carcass	17 ± 0	4 of 4	0.06	Down
S2 cells (growing)	49 ± 2	4 of 4	0.17	Down
Whole fly	293 ± 10	4 of 4

(CG8080):

Annotation Number : CG8080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033373
Gbrowse : chr2R:4977278-4980474 (-) // 100.0 //
Probeset : 1627581_at
Accessions : protein= NP_788288;, nucleotide= NM_176108;
Interpro : 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred f
FlyMine data for FBgn0033373.
VDRC has 2 RNAi stocks for FBgn0033373 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	140 ± 9	4 of 4	0.70	Down
Head	213 ± 11	4 of 4	1.10	None
Eye	102 ± 8	4 of 4	0.52	Down
Thoracicoabdominal ganglion	138 ± 8	4 of 4	0.70	Down
Salivary gland	53 ± 8	4 of 4	0.27	Down
Crop	93 ± 4	4 of 4	0.50	Down
Midgut	201 ± 8	4 of 4	1.00	None
Tubule	480 ± 56	4 of 4	2.40	Up
Hindgut	96 ± 3	4 of 4	0.50	Down
Heart	247 ± 7	4 of 4	1.25	Up
Fat body	415 ± 38	4 of 4	2.10	Up
Ovary	263 ± 11	4 of 4	1.30	Up
Testis	144 ± 6	4 of 4	0.70	Down
Male accessory glands	54 ± 6	4 of 4	0.30	Down
Virgin spermatheca	497 ± 15	4 of 4	2.51	Up
Mated spermatheca	318 ± 27	4 of 4	1.61	Up
Adult carcass	266 ± 17	4 of 4	1.30	Up
Larval CNS	97 ± 6	4 of 4	0.49	Down
Larval Salivary gland	163 ± 8	4 of 4	0.83	None
Larval midgut	491 ± 8	4 of 4	2.48	Up
Larval tubule	781 ± 23	4 of 4	3.90	Up
Larval hindgut	150 ± 9	4 of 4	0.76	Down
Larval fat body	1243 ± 71	4 of 4	6.30	Up
Larval trachea	34 ± 3	4 of 4	0.17	Down
Larval carcass	151 ± 18	4 of 4	0.77	None
S2 cells (growing)	178 ± 2	4 of 4	0.90	None
Whole fly	198 ± 11	4 of 4

Looking for FBgn0033373. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720