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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033374 through 18771 annotations produced 2 hits



/// (CG13741 /// CG8080):

Annotation Number : CG13741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033373 /// FBgn0033374
Gbrowse : chr2R:4980007-4982173 (-) // 100.0 //
Probeset : 1628731_s_at
Accessions : protein= NP_788288; /// NP_788289;, nucleotide= NM_176108; /// NM_176109;
Interpro : 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred f
FlyMine data for FBgn0033373 /// FBgn0033374.
BioGrid reports that CG13741 interacts with CG32156 CG4983 CG7697 CG7742 CG33275 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 24 of 4 0.10Down
Head32 ± 24 of 4 0.10Down
Eye8 ± 12 of 4 0.03Down
Thoracicoabdominal ganglion13 ± 14 of 4 0.00Down
Salivary gland18 ± 13 of 4 0.06Down
Crop18 ± 24 of 4 0.10Down
Midgut28 ± 54 of 4 0.10Down
Tubule19 ± 73 of 4 0.10Down
Hindgut17 ± 14 of 4 0.10Down
Heart37 ± 44 of 4 0.13Down
Fat body69 ± 184 of 4 0.24Down
Ovary931 ± 114 of 4 3.20Up
Testis42 ± 44 of 4 0.10Down
Male accessory glands24 ± 14 of 4 0.10Down
Virgin spermatheca53 ± 84 of 4 0.18Down
Mated spermatheca27 ± 24 of 4 0.09Down
Adult carcass52 ± 64 of 4 0.20Down
Larval CNS19 ± 44 of 4 0.07Down
Larval Salivary gland16 ± 24 of 4 0.06Down
Larval midgut43 ± 14 of 4 0.15Down
Larval tubule72 ± 44 of 4 0.20Down
Larval hindgut17 ± 14 of 4 0.06Down
Larval fat body306 ± 34 of 4 1.00None
Larval trachea7 ± 31 of 4 0.02Down
Larval carcass17 ± 04 of 4 0.06Down
S2 cells (growing)49 ± 24 of 4 0.17Down
Whole fly293 ± 104 of 4



(CG13741):

Annotation Number : CG13741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033374
Gbrowse : chr2R:4980007-4982173 (-) // 100.0 //
Probeset : 1633051_at
Accessions : protein= NP_788289;, nucleotide= NM_176109;
FlyMine data for FBgn0033374.
BDGP gene expression has embryonic in situ data for CG13741: 10 pix of staining in 5 body parts.
BioGrid reports that CG13741 interacts with CG32156 CG4983 CG7697 CG7742 CG33275 .
TRiP has 1 RNAi stocks for FBgn0033374 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033374 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye4 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.03Down
Crop3 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule6 ± 20 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 11 of 4 0.02Down
Fat body4 ± 20 of 4 0.04Down
Ovary317 ± 64 of 4 2.30Up
Testis22 ± 14 of 4 0.20Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 01 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.02Down
Adult carcass10 ± 31 of 4 0.10Down
Larval CNS7 ± 24 of 4 0.05Down
Larval Salivary gland5 ± 11 of 4 0.04Down
Larval midgut4 ± 10 of 4 0.04Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body37 ± 42 of 4 0.30Down
Larval trachea1 ± 20 of 4 0.01Down
Larval carcass2 ± 10 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly136 ± 114 of 4

Looking for FBgn0033374. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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