FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033377 through 18771 annotations produced 2 hits

Phosphomannomutase 45A (Pmm45A):

Annotation Number : CG8073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033377
Gbrowse : chr2R:4994646-4997217 (-) // 100.0 //
Probeset : 1626864_at
Accessions : protein= NP_610453; /// NP_724747;, nucleotide= NM_136609; /// NM_165643;
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004615 // phosphomannomutase activity // i
FlyMine data for FBgn0033377.
VDRC has 3 RNAi stocks for FBgn0033377 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	155 ± 7	4 of 4	0.60	Down
Head	125 ± 12	4 of 4	0.50	Down
Eye	123 ± 3	4 of 4	0.45	Down
Thoracicoabdominal ganglion	146 ± 11	4 of 4	0.50	Down
Salivary gland	164 ± 5	4 of 4	0.59	Down
Crop	168 ± 9	4 of 4	0.60	Down
Midgut	142 ± 13	4 of 4	0.50	Down
Tubule	179 ± 8	4 of 4	0.60	Down
Hindgut	162 ± 7	4 of 4	0.60	Down
Heart	171 ± 7	4 of 4	0.62	Down
Fat body	189 ± 34	4 of 4	0.68	Down
Ovary	278 ± 6	4 of 4	1.00	None
Testis	1762 ± 122	4 of 4	6.40	Up
Male accessory glands	290 ± 6	4 of 4	1.00	None
Virgin spermatheca	188 ± 5	4 of 4	0.68	Down
Mated spermatheca	121 ± 12	4 of 4	0.44	Down
Adult carcass	133 ± 2	4 of 4	0.50	Down
Larval CNS	327 ± 15	4 of 4	1.18	Up
Larval Salivary gland	541 ± 23	4 of 4	1.95	Up
Larval midgut	253 ± 5	4 of 4	0.91	None
Larval tubule	226 ± 7	4 of 4	0.80	Down
Larval hindgut	290 ± 9	4 of 4	1.05	None
Larval fat body	484 ± 17	4 of 4	1.70	Up
Larval trachea	179 ± 16	4 of 4	0.65	Down
Larval carcass	191 ± 15	4 of 4	0.69	Down
S2 cells (growing)	453 ± 11	4 of 4	1.63	Up
Whole fly	277 ± 8	4 of 4

Phosphomannomutase 45A (Pmm45A):

Annotation Number : CG8073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033377
Gbrowse : chr2R:4994646-4997228 (-) // 100.0 //
Probeset : 1628550_a_at
Accessions : protein= NP_610453; /// NP_724747;, nucleotide= NM_136609; /// NM_165643;
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004615 // phosphomannomutase activity // i
FlyMine data for FBgn0033377.
VDRC has 3 RNAi stocks for FBgn0033377 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	140 ± 3	4 of 4	0.60	Down
Head	115 ± 6	4 of 4	0.50	Down
Eye	76 ± 2	4 of 4	0.31	Down
Thoracicoabdominal ganglion	127 ± 5	4 of 4	0.50	Down
Salivary gland	208 ± 12	4 of 4	0.84	Down
Crop	121 ± 2	4 of 4	0.50	Down
Midgut	153 ± 6	4 of 4	0.60	Down
Tubule	198 ± 8	4 of 4	0.80	Down
Hindgut	138 ± 3	4 of 4	0.60	Down
Heart	93 ± 4	4 of 4	0.38	Down
Fat body	136 ± 22	4 of 4	0.55	Down
Ovary	229 ± 7	4 of 4	0.90	None
Testis	1574 ± 25	4 of 4	6.40	Up
Male accessory glands	291 ± 6	4 of 4	1.20	Up
Virgin spermatheca	209 ± 3	4 of 4	0.85	Down
Mated spermatheca	142 ± 17	4 of 4	0.58	Down
Adult carcass	109 ± 6	4 of 4	0.40	Down
Larval CNS	290 ± 9	4 of 4	1.18	Up
Larval Salivary gland	524 ± 13	4 of 4	2.12	Up
Larval midgut	252 ± 6	4 of 4	1.02	None
Larval tubule	228 ± 3	4 of 4	0.90	None
Larval hindgut	224 ± 7	4 of 4	0.91	None
Larval fat body	481 ± 25	4 of 4	1.90	Up
Larval trachea	152 ± 17	4 of 4	0.62	Down
Larval carcass	152 ± 14	4 of 4	0.62	Down
S2 cells (growing)	460 ± 7	4 of 4	1.86	Up
Whole fly	247 ± 8	4 of 4

Looking for FBgn0033377. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720