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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033378 through 18771 annotations produced 1 hits



tsunagi (tsu):

Annotation Number : CG8781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033378
Gbrowse : chr2R:4998305-4999087 (+) // 100.0 //
Probeset : 1623902_at
Accessions : protein= NP_610454;, nucleotide= NM_136610;
Pathway : via spliceosome // inferred by curator /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0033378.
BDGP gene expression has embryonic in situ data for tsu: 4 pix of staining in 1 body parts.
BioGrid reports that CG8781 interacts with CG9401 CG9401 .
TRiP has 2 RNAi stocks for FBgn0033378 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain267 ± 94 of 4 0.60Down
Head288 ± 144 of 4 0.70Down
Eye237 ± 124 of 4 0.55Down
Thoracicoabdominal ganglion295 ± 74 of 4 0.70Down
Salivary gland153 ± 34 of 4 0.35Down
Crop412 ± 94 of 4 1.00None
Midgut315 ± 104 of 4 0.70Down
Tubule340 ± 64 of 4 0.80Down
Hindgut350 ± 154 of 4 0.80Down
Heart237 ± 124 of 4 0.55Down
Fat body193 ± 264 of 4 0.45Down
Ovary781 ± 264 of 4 1.80Up
Testis140 ± 54 of 4 0.30Down
Male accessory glands416 ± 44 of 4 1.00None
Virgin spermatheca333 ± 74 of 4 0.77Down
Mated spermatheca356 ± 224 of 4 0.82None
Adult carcass250 ± 114 of 4 0.60Down
Larval CNS954 ± 424 of 4 2.21Up
Larval Salivary gland476 ± 324 of 4 1.10None
Larval midgut179 ± 54 of 4 0.41Down
Larval tubule511 ± 164 of 4 1.20Up
Larval hindgut306 ± 254 of 4 0.71Down
Larval fat body328 ± 234 of 4 0.80Down
Larval trachea430 ± 574 of 4 0.99None
Larval carcass350 ± 84 of 4 0.81Down
S2 cells (growing)846 ± 194 of 4 1.96Up
Whole fly432 ± 244 of 4

Looking for FBgn0033378. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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