FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033389 through 18771 annotations produced 1 hits

Rad51C (Rad51C):

Annotation Number : CG2412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033389
Gbrowse : chr2R:5053239-5054371 (+) // 100.0 //
Probeset : 1629547_at
Accessions : protein= NP_610466;, nucleotide= NM_136622;
Interpro : "0000150 // recombinase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase
FlyMine data for FBgn0033389.
VDRC has 3 RNAi stocks for FBgn0033389 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	2 of 4	1.30	None
Head	4 ± 1	1 of 4	1.00	None
Eye	8 ± 1	0 of 4	1.88	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	1.10	None
Salivary gland	6 ± 3	0 of 4	1.48	None
Crop	7 ± 0	0 of 4	1.70	None
Midgut	6 ± 2	0 of 4	1.50	None
Tubule	5 ± 0	0 of 4	1.10	None
Hindgut	6 ± 1	0 of 4	1.50	None
Heart	7 ± 0	3 of 4	1.75	None
Fat body	12 ± 2	2 of 4	2.74	Up
Ovary	9 ± 1	4 of 4	2.20	None
Testis	3 ± 1	0 of 4	0.80	None
Male accessory glands	7 ± 2	0 of 4	1.60	None
Virgin spermatheca	7 ± 2	0 of 4	1.62	None
Mated spermatheca	7 ± 2	0 of 4	1.66	None
Adult carcass	10 ± 3	1 of 4	2.30	None
Larval CNS	10 ± 3	2 of 4	2.43	Up
Larval Salivary gland	11 ± 0	3 of 4	2.60	Up
Larval midgut	7 ± 1	1 of 4	1.58	None
Larval tubule	5 ± 0	0 of 4	1.10	None
Larval hindgut	7 ± 0	0 of 4	1.56	None
Larval fat body	4 ± 0	1 of 4	1.00	None
Larval trachea	9 ± 2	2 of 4	2.22	Up
Larval carcass	6 ± 0	0 of 4	1.42	None
S2 cells (growing)	18 ± 1	4 of 4	4.11	Up
Whole fly	4 ± 1	0 of 4

Looking for FBgn0033389. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720