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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033391 through 18771 annotations produced 2 hits



(CG8026):

Annotation Number : CG8026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033391
Gbrowse : chr2R:5074165-5079600 (-) // 100.0 //
Probeset : 1633840_a_at
Accessions : protein= NP_610468; /// NP_724769;, nucleotide= NM_136624; /// NM_165664;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0033391.
BDGP gene expression has embryonic in situ data for CG8026: 11 pix of staining in 3 body parts.
Homophila reports that CG8026 is a close match (6e-11) to human gene PHC;SLC25A3 (NP_005879), a gene associated with Micochondrial phosphate carrier deficiency, 610773 (3).
VDRC has 3 RNAi stocks for FBgn0033391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain215 54 of 4 1.20None
Head152 54 of 4 0.90None
Eye158 144 of 4 0.90None
Thoracicoabdominal ganglion408 84 of 4 2.30Up
Salivary gland129 64 of 4 0.74None
Crop106 54 of 4 0.60Down
Midgut257 74 of 4 1.50Up
Tubule401 254 of 4 2.30Up
Hindgut256 74 of 4 1.50Up
Heart159 94 of 4 0.91None
Fat body202 124 of 4 1.15None
Ovary271 54 of 4 1.50Up
Testis89 34 of 4 0.50Down
Male accessory glands72 64 of 4 0.40Down
Virgin spermatheca243 304 of 4 1.38None
Mated spermatheca278 74 of 4 1.58Up
Adult carcass185 84 of 4 1.10None
Larval CNS129 164 of 4 0.73None
Larval Salivary gland150 134 of 4 0.86None
Larval midgut335 334 of 4 1.91Up
Larval tubule325 134 of 4 1.90Up
Larval hindgut219 174 of 4 1.24None
Larval fat body82 104 of 4 0.50Down
Larval trachea96 44 of 4 0.55Down
Larval carcass152 214 of 4 0.86None
S2 cells (growing)220 44 of 4 1.25None
Whole fly175 174 of 4



(CG8026):

Annotation Number : CG8026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033391
Gbrowse : chr2R:5074165-5079600 (-) // 100.0 //
Probeset : 1632304_at
Accessions : protein= NP_610468; /// NP_724769;, nucleotide= NM_136624; /// NM_165664;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0033391.
BDGP gene expression has embryonic in situ data for CG8026: 11 pix of staining in 3 body parts.
Homophila reports that CG8026 is a close match (6e-11) to human gene PHC;SLC25A3 (NP_005879), a gene associated with Micochondrial phosphate carrier deficiency, 610773 (3).
VDRC has 3 RNAi stocks for FBgn0033391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 24 of 4 3.70Up
Head10 04 of 4 1.70Up
Eye10 13 of 4 1.73None
Thoracicoabdominal ganglion21 24 of 4 3.60Up
Salivary gland15 22 of 4 2.52Up
Crop17 14 of 4 2.90Up
Midgut16 14 of 4 2.80Up
Tubule25 34 of 4 4.40Up
Hindgut22 24 of 4 3.90Up
Heart7 12 of 4 1.33None
Fat body14 34 of 4 2.49Up
Ovary2 01 of 4 0.50Down
Testis2 01 of 4 0.30Down
Male accessory glands9 22 of 4 1.50None
Virgin spermatheca8 02 of 4 1.41None
Mated spermatheca7 11 of 4 1.34None
Adult carcass17 23 of 4 2.90Up
Larval CNS14 14 of 4 2.37Up
Larval Salivary gland13 33 of 4 2.27None
Larval midgut12 13 of 4 2.02Up
Larval tubule17 04 of 4 2.90Up
Larval hindgut12 34 of 4 2.02None
Larval fat body10 22 of 4 1.70None
Larval trachea6 32 of 4 1.08None
Larval carcass12 13 of 4 2.05Up
S2 cells (growing)12 14 of 4 2.16Up
Whole fly5 04 of 4

Looking for FBgn0033391. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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