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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033401 through 18771 annotations produced 1 hits



(CG1968):

Annotation Number : CG1968
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033401
Gbrowse : chr2R:5174340-5176530 (+) // 100.0 //
Probeset : 1631304_a_at
Accessions : protein= NP_610476; /// NP_724783;, nucleotide= NM_136632; /// NM_165673;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0033401.
BDGP gene expression has embryonic in situ data for CG1968: 14 pix of staining in 10 body parts.
BioGrid reports that CG1968 interacts with CG2038 CG30183 CG31324 CG31374 CG32809 CG4303 CG4617 CG5140 CG5341 CG5857 CG6570 CG7352 CG8065 CG8606 .
VDRC has 2 RNAi stocks for FBgn0033401 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 24 of 4 1.00None
Head88 94 of 4 0.80None
Eye87 54 of 4 0.81Down
Thoracicoabdominal ganglion104 84 of 4 1.00None
Salivary gland214 154 of 4 1.99Up
Crop122 24 of 4 1.10Up
Midgut121 54 of 4 1.10None
Tubule183 144 of 4 1.70Up
Hindgut120 64 of 4 1.10None
Heart89 24 of 4 0.84Down
Fat body98 214 of 4 0.91None
Ovary164 44 of 4 1.50Up
Testis50 14 of 4 0.50Down
Male accessory glands245 114 of 4 2.30Up
Virgin spermatheca90 64 of 4 0.84None
Mated spermatheca98 44 of 4 0.91None
Adult carcass89 64 of 4 0.80None
Larval CNS91 94 of 4 0.85Down
Larval Salivary gland372 174 of 4 3.46Up
Larval midgut99 44 of 4 0.92None
Larval tubule118 34 of 4 1.10None
Larval hindgut86 54 of 4 0.81Down
Larval fat body56 74 of 4 0.50Down
Larval trachea128 154 of 4 1.19None
Larval carcass78 44 of 4 0.73Down
S2 cells (growing)134 34 of 4 1.25Up
Whole fly107 34 of 4

Looking for FBgn0033401. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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