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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033402 through 18771 annotations produced 1 hits



krapfen (Myd88):

Annotation Number : CG2078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033402
Gbrowse : chr2R:5191182-5196181 (-) // 100.0 //
Probeset : 1636706_at
Accessions : protein= NP_610479;, nucleotide= NM_136635;
Pathway : 0031224 // intrinsic to membrane // inferred from electronic annotation
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005121 // Toll binding // inferre
FlyMine data for FBgn0033402.
BDGP gene expression has embryonic in situ data for Myd88: 23 pix of staining in 8 body parts.
Homophila reports that CG2078 is a close match (2e-16) to human gene MYD88;MYD88D (NP_002459), a gene associated with Pyogenic bacterial infections, recurrent, due to MYD88 deficiency, 612260 (3).
BioGrid reports that CG2078 interacts with CG3978 CG5490 CG5490 .
TRiP has 1 RNAi stocks for FBgn0033402 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.20Down
Head83 34 of 4 0.80Down
Eye37 24 of 4 0.35Down
Thoracicoabdominal ganglion40 24 of 4 0.40Down
Salivary gland1329 304 of 412.33Up
Crop102 44 of 4 1.00None
Midgut213 94 of 4 2.00Up
Tubule360 244 of 4 3.30Up
Hindgut391 124 of 4 3.60Up
Heart88 34 of 4 0.82Down
Fat body125 174 of 4 1.16None
Ovary137 34 of 4 1.30Up
Testis32 14 of 4 0.30Down
Male accessory glands136 44 of 4 1.30Up
Virgin spermatheca274 104 of 4 2.54Up
Mated spermatheca276 84 of 4 2.56Up
Adult carcass137 44 of 4 1.30Up
Larval CNS57 14 of 4 0.53Down
Larval Salivary gland356 194 of 4 3.31Up
Larval midgut181 134 of 4 1.68Up
Larval tubule357 54 of 4 3.30Up
Larval hindgut309 164 of 4 2.87Up
Larval fat body159 134 of 4 1.50Up
Larval trachea180 114 of 4 1.68Up
Larval carcass209 284 of 4 1.94Up
S2 cells (growing)161 24 of 4 1.49Up
Whole fly107 34 of 4

Looking for FBgn0033402. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime