FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033402 through 18771 annotations produced 1 hits

krapfen (Myd88):

Annotation Number : CG2078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033402
Gbrowse : chr2R:5191182-5196181 (-) // 100.0 //
Probeset : 1636706_at
Accessions : protein= NP_610479;, nucleotide= NM_136635;
Pathway : 0031224 // intrinsic to membrane // inferred from electronic annotation
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005121 // Toll binding // inferre
FlyMine data for FBgn0033402.
BDGP gene expression has embryonic in situ data for Myd88: 23 pix of staining in 8 body parts.
Homophila reports that CG2078 is a close match (2e-16) to human gene MYD88;MYD88D (NP_002459), a gene associated with Pyogenic bacterial infections, recurrent, due to MYD88 deficiency, 612260 (3).
BioGrid reports that CG2078 interacts with CG3978 CG5490 CG5490 .
TRiP has 1 RNAi stocks for FBgn0033402 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033402 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 1	4 of 4	0.20	Down
Head	83 ± 3	4 of 4	0.80	Down
Eye	37 ± 2	4 of 4	0.35	Down
Thoracicoabdominal ganglion	40 ± 2	4 of 4	0.40	Down
Salivary gland	1329 ± 30	4 of 4	12.33	Up
Crop	102 ± 4	4 of 4	1.00	None
Midgut	213 ± 9	4 of 4	2.00	Up
Tubule	360 ± 24	4 of 4	3.30	Up
Hindgut	391 ± 12	4 of 4	3.60	Up
Heart	88 ± 3	4 of 4	0.82	Down
Fat body	125 ± 17	4 of 4	1.16	None
Ovary	137 ± 3	4 of 4	1.30	Up
Testis	32 ± 1	4 of 4	0.30	Down
Male accessory glands	136 ± 4	4 of 4	1.30	Up
Virgin spermatheca	274 ± 10	4 of 4	2.54	Up
Mated spermatheca	276 ± 8	4 of 4	2.56	Up
Adult carcass	137 ± 4	4 of 4	1.30	Up
Larval CNS	57 ± 1	4 of 4	0.53	Down
Larval Salivary gland	356 ± 19	4 of 4	3.31	Up
Larval midgut	181 ± 13	4 of 4	1.68	Up
Larval tubule	357 ± 5	4 of 4	3.30	Up
Larval hindgut	309 ± 16	4 of 4	2.87	Up
Larval fat body	159 ± 13	4 of 4	1.50	Up
Larval trachea	180 ± 11	4 of 4	1.68	Up
Larval carcass	209 ± 28	4 of 4	1.94	Up
S2 cells (growing)	161 ± 2	4 of 4	1.49	Up
Whole fly	107 ± 3	4 of 4

Looking for FBgn0033402. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720