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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033405 through 18771 annotations produced 1 hits


Annotation Number : CG13954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033405
Gbrowse : chr2R:5258963-5261741 (-) // 100.0 //
Probeset : 1635304_at
Accessions : protein= NP_001097239;, nucleotide= NM_001103769;
FlyMine data for FBgn0033405.
VDRC has 3 RNAi stocks for FBgn0033405 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.10None
Head0 00 of 4 0.60None
Eye1 00 of 4 0.76None
Thoracicoabdominal ganglion0 00 of 4 0.70None
Salivary gland3 10 of 4 2.48None
Crop1 00 of 4 0.90None
Midgut1 00 of 4 1.40None
Tubule1 00 of 4 1.20None
Hindgut0 00 of 4 0.40None
Heart1 00 of 4 1.07None
Fat body1 00 of 4 1.17None
Ovary0 00 of 4 0.60None
Testis3 10 of 4 2.70None
Male accessory glands2 00 of 4 1.60None
Virgin spermatheca1 00 of 4 1.04None
Mated spermatheca0 00 of 4 0.63None
Adult carcass2 00 of 4 2.00None
Larval CNS0 00 of 4 0.69None
Larval Salivary gland1 00 of 4 0.87None
Larval midgut1 00 of 4 0.94None
Larval tubule1 00 of 4 0.70None
Larval hindgut1 00 of 4 0.87None
Larval fat body1 00 of 4 1.00None
Larval trachea0 00 of 4 0.46None
Larval carcass1 00 of 4 0.96None
S2 cells (growing)1 00 of 4 0.94None
Whole fly1 00 of 4

Looking for FBgn0033405. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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