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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033408 through 18771 annotations produced 1 hits



/// (CG8800 /// CG8801):

Annotation Number : CG8800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033408
Gbrowse : chr2R:5282900-5283585 (-) // 100.0 //
Probeset : 1624820_at
Accessions : protein= NP_610483;, nucleotide= NM_136639;
Pathway : 0005634 // nucleus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic
FlyMine data for FBgn0033408.
VDRC has 3 RNAi stocks for FBgn0033408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head8 20 of 4 0.80None
Eye4 00 of 4 0.42Down
Thoracicoabdominal ganglion4 10 of 4 0.50Down
Salivary gland10 20 of 4 1.01None
Crop1 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule5 00 of 4 0.50Down
Hindgut1 00 of 4 0.20Down
Heart2 10 of 4 0.30Down
Fat body11 60 of 4 1.09None
Ovary1 00 of 4 0.20Down
Testis84 84 of 4 8.40Up
Male accessory glands8 30 of 4 0.80None
Virgin spermatheca9 20 of 4 0.95None
Mated spermatheca13 41 of 4 1.36None
Adult carcass6 20 of 4 0.60None
Larval CNS5 10 of 4 0.59Down
Larval Salivary gland2 10 of 4 0.28Down
Larval midgut3 10 of 4 0.30Down
Larval tubule7 00 of 4 0.70None
Larval hindgut5 10 of 4 0.55Down
Larval fat body18 21 of 4 1.80Up
Larval trachea3 20 of 4 0.36Down
Larval carcass8 10 of 4 0.84None
S2 cells (growing)6 10 of 4 0.60None
Whole fly10 10 of 4

Looking for FBgn0033408. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime