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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033421 through 18771 annotations produced 1 hits



(CG1888):

Annotation Number : CG1888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033421
Gbrowse : chr2R:5432676-5434459 (-) // 100.0 //
Probeset : 1641157_at
Accessions : protein= NP_610495;, nucleotide= NM_136651;
FlyMine data for FBgn0033421.
BioGrid reports that CG1888 interacts with CG1888 CG4799 .
VDRC has 2 RNAi stocks for FBgn0033421 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 24 of 4 0.60Down
Head123 ± 124 of 4 1.10None
Eye263 ± 94 of 4 2.45Up
Thoracicoabdominal ganglion92 ± 34 of 4 0.90Down
Salivary gland306 ± 144 of 4 2.85Up
Crop206 ± 74 of 4 1.90Up
Midgut184 ± 54 of 4 1.70Up
Tubule105 ± 54 of 4 1.00None
Hindgut162 ± 54 of 4 1.50Up
Heart131 ± 134 of 4 1.22None
Fat body133 ± 164 of 4 1.24Up
Ovary149 ± 24 of 4 1.40Up
Testis30 ± 14 of 4 0.30Down
Male accessory glands178 ± 124 of 4 1.70Up
Virgin spermatheca192 ± 94 of 4 1.79Up
Mated spermatheca168 ± 124 of 4 1.56Up
Adult carcass146 ± 74 of 4 1.40Up
Larval CNS106 ± 94 of 4 0.99None
Larval Salivary gland548 ± 434 of 4 5.10Up
Larval midgut177 ± 94 of 4 1.65Up
Larval tubule126 ± 54 of 4 1.20Up
Larval hindgut129 ± 44 of 4 1.20Up
Larval fat body74 ± 84 of 4 0.70Down
Larval trachea220 ± 294 of 4 2.05Up
Larval carcass94 ± 84 of 4 0.88None
S2 cells (growing)146 ± 94 of 4 1.36Up
Whole fly107 ± 44 of 4

Looking for FBgn0033421. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime