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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033423 through 18771 annotations produced 1 hits


Annotation Number : CG1809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033423
Gbrowse : chr2R:5449153-5451378 (+) // 100.0 //
Probeset : 1633047_at
Accessions : protein= NP_610496;, nucleotide= NM_136652;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0033423.
BDGP gene expression has embryonic in situ data for CG1809: 14 pix of staining in 2 body parts.
Homophila reports that CG1809 is a close match (1e-92) to human gene (NP_001623), a gene associated with .
BioGrid reports that CG1809 interacts with CG4415 .
VDRC has 1 RNAi stocks for FBgn0033423 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.00Down
Head4 00 of 4 0.00Down
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion8 10 of 4 0.10Down
Salivary gland6 30 of 4 0.04Down
Crop4 10 of 4 0.00Down
Midgut1686 734 of 410.10Up
Tubule6 10 of 4 0.00Down
Hindgut29 44 of 4 0.20Down
Heart3 00 of 4 0.02Down
Fat body3 40 of 4 0.02Down
Ovary2 10 of 4 0.00Down
Testis6 01 of 4 0.00Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.03Down
Mated spermatheca2 10 of 4 0.02Down
Adult carcass4 30 of 4 0.00Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut2093 814 of 412.59Up
Larval tubule6 41 of 4 0.00Down
Larval hindgut290 274 of 4 1.75Up
Larval fat body7 10 of 4 0.00Down
Larval trachea0 00 of 4 0.00Down
Larval carcass2 10 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly166 304 of 4

Looking for FBgn0033423. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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