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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033426 through 18771 annotations produced 1 hits



(CG1814):

Annotation Number : CG1814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033426
Gbrowse : chr2R:5464931-5469352 (+) // 99.76 //
Probeset : 1629401_s_at
Accessions : protein= NP_610499; /// NP_724800; /// NP_724801;, nucleotide= NM_136655; /// NM_165679; /// NM_165680;
FlyMine data for FBgn0033426.
BDGP gene expression has embryonic in situ data for CG1814: 11 pix of staining in 4 body parts.
BioGrid reports that CG1814 interacts with CG5642 CG9091 .
VDRC has 2 RNAi stocks for FBgn0033426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain524 94 of 4 5.30Up
Head253 64 of 4 2.60Up
Eye304 94 of 4 3.10Up
Thoracicoabdominal ganglion545 64 of 4 5.50Up
Salivary gland115 54 of 4 1.17None
Crop117 54 of 4 1.20None
Midgut54 34 of 4 0.60Down
Tubule48 14 of 4 0.50Down
Hindgut73 54 of 4 0.70Down
Heart125 14 of 4 1.28Up
Fat body70 64 of 4 0.71Down
Ovary66 14 of 4 0.70Down
Testis29 24 of 4 0.30Down
Male accessory glands71 24 of 4 0.70Down
Virgin spermatheca55 34 of 4 0.57Down
Mated spermatheca55 34 of 4 0.56Down
Adult carcass255 124 of 4 2.60Up
Larval CNS103 144 of 4 1.05None
Larval Salivary gland98 84 of 4 1.00None
Larval midgut63 34 of 4 0.64Down
Larval tubule39 24 of 4 0.40Down
Larval hindgut51 14 of 4 0.53Down
Larval fat body44 24 of 4 0.40Down
Larval trachea75 124 of 4 0.76Down
Larval carcass157 84 of 4 1.60Up
S2 cells (growing)90 34 of 4 0.92None
Whole fly98 64 of 4

Looking for FBgn0033426. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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