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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033428 through 18771 annotations produced 1 hits



Updo (Updo):

Annotation Number : CG1818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033428
Gbrowse : chr2R:5472171-5473623 (+) // 100.0 //
Probeset : 1627448_at
Accessions : protein= NP_001137627; /// NP_610501;, nucleotide= NM_001144155; /// NM_136657;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004853 // uroporphyrinogen decarboxylase activity // inferred from sequence or structural similarity /// 0004853 // uro
FlyMine data for FBgn0033428.
Homophila reports that CG1818 is a close match (7e-107) to human gene UROD (NP_000365), a gene associated with Porphyria cutanea tarda (3);Porphyria, hepatoerythropoietic (3).
VDRC has 1 RNAi stocks for FBgn0033428 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 ± 34 of 4 0.90None
Head329 ± 154 of 4 0.90None
Eye306 ± 274 of 4 0.88None
Thoracicoabdominal ganglion372 ± 94 of 4 1.10None
Salivary gland893 ± 144 of 4 2.57Up
Crop766 ± 224 of 4 2.20Up
Midgut351 ± 84 of 4 1.00None
Tubule291 ± 224 of 4 0.80Down
Hindgut699 ± 184 of 4 2.00Up
Heart1025 ± 444 of 4 2.95Up
Fat body879 ± 1034 of 4 2.53Up
Ovary439 ± 104 of 4 1.30Up
Testis152 ± 44 of 4 0.40Down
Male accessory glands463 ± 164 of 4 1.30Up
Virgin spermatheca472 ± 124 of 4 1.36Up
Mated spermatheca458 ± 164 of 4 1.32Up
Adult carcass780 ± 324 of 4 2.20Up
Larval CNS314 ± 214 of 4 0.91None
Larval Salivary gland516 ± 424 of 4 1.49Up
Larval midgut243 ± 124 of 4 0.70Down
Larval tubule331 ± 94 of 4 1.00None
Larval hindgut296 ± 54 of 4 0.85Down
Larval fat body216 ± 214 of 4 0.60Down
Larval trachea344 ± 294 of 4 0.99None
Larval carcass345 ± 214 of 4 0.99None
S2 cells (growing)407 ± 54 of 4 1.17Up
Whole fly347 ± 114 of 4

Looking for FBgn0033428. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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