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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033438 through 18771 annotations produced 2 hits



Matrix metalloproteinase 2 (Mmp2):

Annotation Number : CG1794
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033438
Gbrowse : chr2R:5499596-5574170 (-) // 100.0 //
Probeset : 1623299_at
Accessions : protein= NP_995788;, nucleotide= NM_206066;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007561 // imaginal disc eversion // inferred from mutant ph
Interpro : thorax closure // inferred from mutant phenotype /// 0048477 // oogenesis // inferred from mutant phenotype /// 0071711
FlyMine data for FBgn0033438.
Homophila reports that CG1794 is a close match (7e-15) to human gene CLG4B;MMP9 (NP_004985), a gene associated with {Lumbar disc herniation, susceptibility to}, 603932 (3).
BioGrid reports that CG1794 interacts with CG6281 CG4859 .
TRiP has 1 RNAi stocks for FBgn0033438 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 ± 24 of 410.90Up
Head31 ± 24 of 4 3.70Up
Eye15 ± 14 of 4 1.84Up
Thoracicoabdominal ganglion51 ± 34 of 4 6.20Up
Salivary gland14 ± 60 of 4 1.68None
Crop17 ± 14 of 4 2.10Up
Midgut16 ± 10 of 4 1.90Up
Tubule3 ± 00 of 4 0.40Down
Hindgut6 ± 00 of 4 0.80None
Heart7 ± 22 of 4 0.92None
Fat body3 ± 30 of 4 0.46None
Ovary6 ± 11 of 4 0.70None
Testis3 ± 10 of 4 0.50None
Male accessory glands4 ± 10 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.16Down
Mated spermatheca2 ± 10 of 4 0.34None
Adult carcass11 ± 11 of 4 1.30None
Larval CNS49 ± 44 of 4 5.94Up
Larval Salivary gland1 ± 00 of 4 0.12Down
Larval midgut13 ± 10 of 4 1.55None
Larval tubule3 ± 00 of 4 0.40None
Larval hindgut5 ± 10 of 4 0.69None
Larval fat body14 ± 50 of 4 1.70None
Larval trachea7 ± 22 of 4 0.89None
Larval carcass23 ± 83 of 4 2.80None
S2 cells (growing)22 ± 14 of 4 2.64Up
Whole fly8 ± 22 of 4



Matrix metalloproteinase 2 (Mmp2):

Annotation Number : HDC05455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033438
Gbrowse : chr2R:5569068-5570437 (-) // 100.0 //
Probeset : 1637726_at
Accessions : protein= NP_995788;, nucleotide= NM_206066;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007561 // imaginal disc eversion // inferred from mutant ph
Interpro : thorax closure // inferred from mutant phenotype /// 0048477 // oogenesis // inferred from mutant phenotype /// 0071711
FlyMine data for FBgn0033438.
TRiP has 1 RNAi stocks for FBgn0033438 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20None
Head0 ± 00 of 4 0.30None
Eye2 ± 10 of 4 0.70None
Thoracicoabdominal ganglion4 ± 21 of 4 1.30None
Salivary gland2 ± 00 of 4 0.62None
Crop3 ± 10 of 4 1.10None
Midgut6 ± 00 of 4 1.90None
Tubule2 ± 00 of 4 0.70Down
Hindgut1 ± 00 of 4 0.60None
Heart1 ± 00 of 4 0.31None
Fat body2 ± 10 of 4 0.70None
Ovary1 ± 00 of 4 0.40None
Testis2 ± 00 of 4 0.60None
Male accessory glands3 ± 20 of 4 1.10None
Virgin spermatheca2 ± 00 of 4 0.79None
Mated spermatheca4 ± 10 of 4 1.37None
Adult carcass6 ± 21 of 4 1.90None
Larval CNS1 ± 10 of 4 0.45None
Larval Salivary gland3 ± 10 of 4 0.90None
Larval midgut4 ± 00 of 4 1.29None
Larval tubule2 ± 00 of 4 0.80None
Larval hindgut3 ± 00 of 4 1.14None
Larval fat body3 ± 00 of 4 1.10None
Larval trachea0 ± 00 of 4 0.19None
Larval carcass2 ± 00 of 4 0.67None
S2 cells (growing)1 ± 00 of 4 0.45None
Whole fly3 ± 10 of 4

Looking for FBgn0033438. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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