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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033443 through 18771 annotations produced 1 hits



(CG1698):

Annotation Number : CG1698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033443
Gbrowse : chr2R:5680847-5685512 (+) // 100.0 //
Probeset : 1623083_at
Accessions : protein= NP_610517;, nucleotide= NM_136673;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0033443.
BDGP gene expression has embryonic in situ data for CG1698: 18 pix of staining in 4 body parts.
Homophila reports that CG1698 is a close match (4e-66) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
BioGrid reports that CG1698 interacts with CG7524 .
VDRC has 2 RNAi stocks for FBgn0033443 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 14 of 4 0.20Down
Head14 23 of 4 0.10Down
Eye6 13 of 4 0.07Down
Thoracicoabdominal ganglion15 14 of 4 0.20Down
Salivary gland165 184 of 4 1.69Up
Crop39 34 of 4 0.40Down
Midgut717 494 of 4 7.40Up
Tubule416 384 of 4 4.30Up
Hindgut247 104 of 4 2.50Up
Heart6 02 of 4 0.07Down
Fat body16 44 of 4 0.17Down
Ovary30 34 of 4 0.30Down
Testis68 34 of 4 0.70None
Male accessory glands8 31 of 4 0.10Down
Virgin spermatheca26 24 of 4 0.27Down
Mated spermatheca24 34 of 4 0.25Down
Adult carcass18 14 of 4 0.20Down
Larval CNS7 14 of 4 0.08Down
Larval Salivary gland15 13 of 4 0.16Down
Larval midgut625 384 of 4 6.41Up
Larval tubule33 14 of 4 0.30Down
Larval hindgut149 164 of 4 1.53None
Larval fat body6 20 of 4 0.10Down
Larval trachea60 154 of 4 0.62None
Larval carcass98 84 of 4 1.01None
S2 cells (growing)2 00 of 4 0.02Down
Whole fly97 154 of 4

Looking for FBgn0033443. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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