FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033446 through 18771 annotations produced 1 hits

(CG1648):

Annotation Number : CG1648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033446
Gbrowse : chr2R:5698889-5707556 (-) // 100.0 //
Probeset : 1634935_a_at
Accessions : protein= NP_610518; /// NP_724824;, nucleotide= NM_136674; /// NM_165696;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0033446.
BDGP gene expression has embryonic in situ data for CG1648: 16 pix of staining in 8 body parts.
BioGrid reports that CG1648 interacts with CG1746 .
VDRC has 2 RNAi stocks for FBgn0033446 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	450 ± 12	4 of 4	0.80	None
Head	783 ± 47	4 of 4	1.40	None
Eye	693 ± 17	4 of 4	1.26	None
Thoracicoabdominal ganglion	819 ± 13	4 of 4	1.50	None
Salivary gland	121 ± 7	4 of 4	0.22	Down
Crop	1121 ± 20	4 of 4	2.00	Up
Midgut	55 ± 4	4 of 4	0.10	Down
Tubule	35 ± 3	4 of 4	0.10	Down
Hindgut	708 ± 23	4 of 4	1.30	None
Heart	3293 ± 298	4 of 4	5.98	Up
Fat body	3909 ± 800	4 of 4	7.10	Up
Ovary	25 ± 1	4 of 4	0.00	Down
Testis	107 ± 3	4 of 4	0.20	Down
Male accessory glands	2143 ± 190	4 of 4	3.90	Up
Virgin spermatheca	2774 ± 142	4 of 4	5.04	Up
Mated spermatheca	2988 ± 83	4 of 4	5.43	Up
Adult carcass	3104 ± 194	4 of 4	5.60	Up
Larval CNS	222 ± 41	4 of 4	0.40	None
Larval Salivary gland	30 ± 1	4 of 4	0.06	Down
Larval midgut	34 ± 3	4 of 4	0.06	Down
Larval tubule	18 ± 2	4 of 4	0.00	Down
Larval hindgut	348 ± 32	4 of 4	0.63	None
Larval fat body	185 ± 18	4 of 4	0.30	Down
Larval trachea	1412 ± 306	4 of 4	2.57	Up
Larval carcass	611 ± 21	4 of 4	1.11	None
S2 cells (growing)	47 ± 2	4 of 4	0.09	Down
Whole fly	550 ± 107	4 of 4

Looking for FBgn0033446. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720