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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033447 through 18771 annotations produced 1 hits



(CG1625):

Annotation Number : CG1625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033447
Gbrowse : chr2R:5710586-5714630 (-) // 99.86 //
Probeset : 1623802_at
Accessions : protein= NP_001137629; /// NP_610519;, nucleotide= NM_001144157; /// NM_136675;
FlyMine data for FBgn0033447.
VDRC has 3 RNAi stocks for FBgn0033447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.50None
Head7 01 of 4 0.80None
Eye5 10 of 4 0.67None
Thoracicoabdominal ganglion2 00 of 4 0.30Down
Salivary gland10 41 of 4 1.20None
Crop4 11 of 4 0.50None
Midgut5 20 of 4 0.60None
Tubule5 00 of 4 0.60Down
Hindgut4 11 of 4 0.50None
Heart1 00 of 4 0.20Down
Fat body4 30 of 4 0.48None
Ovary4 11 of 4 0.60None
Testis62 14 of 4 7.40Up
Male accessory glands3 00 of 4 0.30Down
Virgin spermatheca5 10 of 4 0.60None
Mated spermatheca2 00 of 4 0.31Down
Adult carcass5 30 of 4 0.60None
Larval CNS4 12 of 4 0.57None
Larval Salivary gland1 00 of 4 0.12Down
Larval midgut2 00 of 4 0.24Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut2 10 of 4 0.28Down
Larval fat body12 31 of 4 1.40None
Larval trachea2 10 of 4 0.24Down
Larval carcass2 00 of 4 0.33Down
S2 cells (growing)0 00 of 4 0.08Down
Whole fly8 11 of 4

Looking for FBgn0033447. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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