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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033451 through 18771 annotations produced 1 hits



(CG1665):

Annotation Number : CG1665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033451
Gbrowse : chr2R:5727295-5728667 (+) // 100.0 //
Probeset : 1624617_at
Accessions : protein= NP_610523;, nucleotide= NM_136679;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0030151 // molybdenum ion binding // inferred f
FlyMine data for FBgn0033451.
BDGP gene expression has embryonic in situ data for CG1665: 4 pix of staining in 1 body parts.
BioGrid reports that CG1665 interacts with CG8942 CG9331 .
VDRC has 2 RNAi stocks for FBgn0033451 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 ± 44 of 4 0.90None
Head127 ± 104 of 4 1.10None
Eye85 ± 84 of 4 0.77None
Thoracicoabdominal ganglion121 ± 74 of 4 1.10None
Salivary gland35 ± 23 of 4 0.32Down
Crop84 ± 44 of 4 0.80Down
Midgut150 ± 74 of 4 1.30Up
Tubule365 ± 24 of 4 3.30Up
Hindgut172 ± 54 of 4 1.50Up
Heart211 ± 124 of 4 1.89Up
Fat body268 ± 234 of 4 2.41Up
Ovary162 ± 34 of 4 1.50Up
Testis15 ± 04 of 4 0.10Down
Male accessory glands33 ± 34 of 4 0.30Down
Virgin spermatheca335 ± 114 of 4 3.00Up
Mated spermatheca249 ± 114 of 4 2.23Up
Adult carcass119 ± 14 of 4 1.10None
Larval CNS129 ± 204 of 4 1.16None
Larval Salivary gland75 ± 34 of 4 0.67Down
Larval midgut148 ± 34 of 4 1.33Up
Larval tubule391 ± 44 of 4 3.50Up
Larval hindgut219 ± 54 of 4 1.97Up
Larval fat body693 ± 694 of 4 6.20Up
Larval trachea263 ± 324 of 4 2.37Up
Larval carcass109 ± 84 of 4 0.98None
S2 cells (growing)122 ± 24 of 4 1.10None
Whole fly111 ± 64 of 4

Looking for FBgn0033451. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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