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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033454 through 18771 annotations produced 1 hits



(CG1671):

Annotation Number : CG1671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033454
Gbrowse : chr2R:5735565-5738323 (+) // 100.0 //
Probeset : 1627977_at
Accessions : protein= NP_610526;, nucleotide= NM_136682;
Pathway : 0032040 // small-subunit processome // inferred from electronic annotation
FlyMine data for FBgn0033454.
BDGP gene expression has embryonic in situ data for CG1671: 12 pix of staining in 12 body parts.
Homophila reports that CG1671 is a close match (3e-17) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG1671 interacts with CG7191 .
VDRC has 3 RNAi stocks for FBgn0033454 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 14 of 4 0.60Down
Head63 ± 24 of 4 0.50Down
Eye56 ± 14 of 4 0.42Down
Thoracicoabdominal ganglion109 ± 74 of 4 0.80Down
Salivary gland87 ± 44 of 4 0.64Down
Crop92 ± 54 of 4 0.70Down
Midgut76 ± 84 of 4 0.60Down
Tubule67 ± 94 of 4 0.50Down
Hindgut57 ± 14 of 4 0.40Down
Heart75 ± 34 of 4 0.56Down
Fat body82 ± 94 of 4 0.61Down
Ovary248 ± 94 of 4 1.80Up
Testis30 ± 34 of 4 0.20Down
Male accessory glands195 ± 84 of 4 1.40Up
Virgin spermatheca101 ± 74 of 4 0.75Down
Mated spermatheca152 ± 74 of 4 1.12None
Adult carcass72 ± 34 of 4 0.50Down
Larval CNS271 ± 164 of 4 2.00Up
Larval Salivary gland172 ± 184 of 4 1.27None
Larval midgut54 ± 44 of 4 0.40Down
Larval tubule43 ± 14 of 4 0.30Down
Larval hindgut112 ± 164 of 4 0.83None
Larval fat body30 ± 34 of 4 0.20Down
Larval trachea221 ± 474 of 4 1.63Up
Larval carcass145 ± 294 of 4 1.08None
S2 cells (growing)191 ± 54 of 4 1.41Up
Whole fly135 ± 74 of 4

Looking for FBgn0033454. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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