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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033457 through 18771 annotations produced 1 hits



(CG1675):

Annotation Number : CG1675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033457
Gbrowse : chr2R:5753153-5754039 (+) // 100.0 //
Probeset : 1631214_at
Accessions : protein= NP_610528;, nucleotide= NM_136684;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0033457.
BDGP gene expression has embryonic in situ data for CG1675: 4 pix of staining in 1 body parts.
BioGrid reports that CG1675 interacts with CG16840 CG32369 CG6416 CG6745 .
VDRC has 3 RNAi stocks for FBgn0033457 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 44 of 4 0.60Down
Head85 ± 44 of 4 0.50Down
Eye86 ± 14 of 4 0.48Down
Thoracicoabdominal ganglion174 ± 54 of 4 1.00None
Salivary gland142 ± 34 of 4 0.79Down
Crop136 ± 24 of 4 0.80Down
Midgut106 ± 34 of 4 0.60Down
Tubule136 ± 74 of 4 0.80Down
Hindgut109 ± 24 of 4 0.60Down
Heart103 ± 84 of 4 0.57Down
Fat body81 ± 164 of 4 0.45Down
Ovary247 ± 24 of 4 1.40Up
Testis441 ± 64 of 4 2.40Up
Male accessory glands249 ± 94 of 4 1.40Up
Virgin spermatheca88 ± 44 of 4 0.49Down
Mated spermatheca96 ± 94 of 4 0.54Down
Adult carcass112 ± 84 of 4 0.60Down
Larval CNS135 ± 134 of 4 0.75Down
Larval Salivary gland156 ± 94 of 4 0.86None
Larval midgut81 ± 24 of 4 0.45Down
Larval tubule162 ± 64 of 4 0.90None
Larval hindgut106 ± 14 of 4 0.59Down
Larval fat body118 ± 144 of 4 0.70Down
Larval trachea208 ± 144 of 4 1.15Up
Larval carcass141 ± 34 of 4 0.78Down
S2 cells (growing)166 ± 24 of 4 0.92Down
Whole fly181 ± 34 of 4

Looking for FBgn0033457. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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