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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033458 through 18771 annotations produced 1 hits



(CG18446):

Annotation Number : CG18446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033458
Gbrowse : chr2R:5758976-5761151 (+) // 100.0 //
Probeset : 1639575_at
Accessions : protein= NP_610529;, nucleotide= NM_136685;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0033458.
BDGP gene expression has embryonic in situ data for CG18446: 35 pix of staining in 26 body parts.
BioGrid reports that CG18446 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0033458 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head31 104 of 4 0.20Down
Eye12 33 of 4 0.07Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland12 40 of 4 0.07Down
Crop8 10 of 4 0.00Down
Midgut6 10 of 4 0.00Down
Tubule13 31 of 4 0.10Down
Hindgut4 10 of 4 0.00Down
Heart21 24 of 4 0.12Down
Fat body51 114 of 4 0.30Down
Ovary597 94 of 4 3.50Up
Testis4 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca38 64 of 4 0.22Down
Mated spermatheca39 104 of 4 0.23Down
Adult carcass25 63 of 4 0.10Down
Larval CNS5 02 of 4 0.03Down
Larval Salivary gland9 23 of 4 0.05Down
Larval midgut7 21 of 4 0.04Down
Larval tubule6 00 of 4 0.00Down
Larval hindgut7 12 of 4 0.04Down
Larval fat body133 154 of 4 0.80None
Larval trachea6 21 of 4 0.04Down
Larval carcass11 10 of 4 0.07Down
S2 cells (growing)8 02 of 4 0.05Down
Whole fly171 114 of 4

Looking for FBgn0033458. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime