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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033460 through 18771 annotations produced 1 hits



sec24 (sec24):

Annotation Number : CG1472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033460
Gbrowse : chr2R:5764403-5769858 (-) // 100.0 //
Probeset : 1640083_at
Accessions : protein= NP_610531;, nucleotide= NM_136687;
Pathway : 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0030134 // ER to Golgi transport vesicle // inf
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0033460.
BioGrid reports that CG1472 interacts with CG6378 CG15693 CG1675 CG1678 CG1725 CG17342 CG1740 CG17903 CG18292 CG2233 CG2238 CG31140 CG3180 CG4550 CG4818 CG5284 CG5386 CG5502 CG5793 CG6843 CG8408 CG9083 CG9184 CG9226 CG9232 CG9526 CG9541 CG32484 .
VDRC has 3 RNAi stocks for FBgn0033460 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 ± 44 of 4 0.90None
Head115 ± 84 of 4 0.70Down
Eye85 ± 94 of 4 0.50Down
Thoracicoabdominal ganglion105 ± 14 of 4 0.60Down
Salivary gland553 ± 224 of 4 3.19Up
Crop225 ± 134 of 4 1.30None
Midgut179 ± 84 of 4 1.00None
Tubule77 ± 74 of 4 0.40Down
Hindgut175 ± 34 of 4 1.00None
Heart118 ± 64 of 4 0.68Down
Fat body178 ± 314 of 4 1.03None
Ovary294 ± 44 of 4 1.70Up
Testis594 ± 404 of 4 3.40Up
Male accessory glands129 ± 44 of 4 0.70None
Virgin spermatheca44 ± 14 of 4 0.25Down
Mated spermatheca51 ± 44 of 4 0.30Down
Adult carcass129 ± 24 of 4 0.70None
Larval CNS157 ± 104 of 4 0.91None
Larval Salivary gland493 ± 284 of 4 2.84Up
Larval midgut199 ± 164 of 4 1.15None
Larval tubule234 ± 54 of 4 1.40Up
Larval hindgut178 ± 34 of 4 1.03None
Larval fat body324 ± 164 of 4 1.90Up
Larval trachea76 ± 54 of 4 0.44Down
Larval carcass143 ± 114 of 4 0.83None
S2 cells (growing)344 ± 84 of 4 1.99Up
Whole fly173 ± 174 of 4

Looking for FBgn0033460. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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