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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033463 through 18771 annotations produced 1 hits



(CG1513):

Annotation Number : CG1513
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033463
Gbrowse : chr2R:5771261-5779183 (-) // 100.0 //
Probeset : 1635222_at
Accessions : protein= NP_001163104; /// NP_610534;, nucleotide= NM_001169633; /// NM_136690;
Interpro : 0008142 // oxysterol binding // inferred from sequence or structural similarity
FlyMine data for FBgn0033463.
BioGrid reports that CG1513 interacts with CG5014 CG7919 CG9205 .
VDRC has 2 RNAi stocks for FBgn0033463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain155 34 of 4 2.60Up
Head57 54 of 4 1.00None
Eye37 44 of 4 0.63Down
Thoracicoabdominal ganglion129 214 of 4 2.20Up
Salivary gland68 64 of 4 1.14None
Crop45 14 of 4 0.80None
Midgut102 34 of 4 1.70Up
Tubule169 104 of 4 2.80Up
Hindgut64 34 of 4 1.10None
Heart29 34 of 4 0.49Down
Fat body31 103 of 4 0.52Down
Ovary73 34 of 4 1.20None
Testis89 24 of 4 1.50Up
Male accessory glands103 44 of 4 1.70Up
Virgin spermatheca16 20 of 4 0.27Down
Mated spermatheca17 22 of 4 0.30Down
Adult carcass40 14 of 4 0.70None
Larval CNS56 54 of 4 0.94None
Larval Salivary gland61 44 of 4 1.02None
Larval midgut69 14 of 4 1.15None
Larval tubule254 44 of 4 4.20Up
Larval hindgut52 04 of 4 0.87None
Larval fat body141 114 of 4 2.40Up
Larval trachea51 44 of 4 0.85None
Larval carcass37 84 of 4 0.62None
S2 cells (growing)142 64 of 4 2.38Up
Whole fly60 64 of 4

Looking for FBgn0033463. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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