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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033467 through 18771 annotations produced 1 hits



(CG15863):

Annotation Number : CG15863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033467
Gbrowse : chr2R:5846729-5847180 (-) // 100.0 //
Probeset : 1631827_at
Accessions : protein= NP_610538;, nucleotide= NM_136694;
Pathway : 0016272 // prefoldin complex // inferred from electronic annotation
Interpro : 0051082 // unfolded protein binding // inferred from electronic annotation
FlyMine data for FBgn0033467.
BioGrid reports that CG15863 interacts with CG6726 CG9868 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 04 of 4 0.50Down
Head63 54 of 4 0.70Down
Eye80 24 of 4 0.83None
Thoracicoabdominal ganglion53 14 of 4 0.60Down
Salivary gland125 144 of 4 1.30None
Crop105 24 of 4 1.10None
Midgut41 34 of 4 0.40Down
Tubule59 24 of 4 0.60Down
Hindgut83 44 of 4 0.90None
Heart56 24 of 4 0.59Down
Fat body69 154 of 4 0.72None
Ovary160 44 of 4 1.70Up
Testis53 44 of 4 0.60Down
Male accessory glands68 44 of 4 0.70None
Virgin spermatheca74 44 of 4 0.77None
Mated spermatheca80 44 of 4 0.83None
Adult carcass49 104 of 4 0.50Down
Larval CNS113 94 of 4 1.18None
Larval Salivary gland36 44 of 4 0.38Down
Larval midgut42 24 of 4 0.45Down
Larval tubule54 24 of 4 0.60Down
Larval hindgut60 54 of 4 0.63Down
Larval fat body49 64 of 4 0.50Down
Larval trachea55 94 of 4 0.57Down
Larval carcass33 24 of 4 0.35Down
S2 cells (growing)54 54 of 4 0.57Down
Whole fly96 104 of 4

Looking for FBgn0033467. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime