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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033469 through 18771 annotations produced 1 hits


Annotation Number : CG12133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033469
Gbrowse : chr2R:5854736-5855941 (+) // 100.0 //
Probeset : 1625737_at
Accessions : protein= NP_610540;, nucleotide= NM_136696;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033469.
Homophila reports that CG12133 is a close match (8e-11) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 4 RNAi stocks for FBgn0033469 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.40None
Head7 21 of 4 3.50None
Eye2 10 of 4 1.27None
Thoracicoabdominal ganglion2 10 of 4 1.10None
Salivary gland7 10 of 4 3.24None
Crop4 10 of 4 2.20None
Midgut5 10 of 4 2.60None
Tubule4 00 of 4 1.80Up
Hindgut5 10 of 4 2.60None
Heart2 00 of 4 1.01None
Fat body8 40 of 4 3.89None
Ovary2 10 of 4 1.20None
Testis5 11 of 4 2.50None
Male accessory glands7 20 of 4 3.40None
Virgin spermatheca1 00 of 4 0.81None
Mated spermatheca5 20 of 4 2.66None
Adult carcass7 20 of 4 3.30None
Larval CNS4 10 of 4 1.93None
Larval Salivary gland4 10 of 4 2.09None
Larval midgut8 10 of 4 3.81Up
Larval tubule6 11 of 4 3.00None
Larval hindgut4 10 of 4 2.20None
Larval fat body9 10 of 4 4.30Up
Larval trachea2 20 of 4 1.00None
Larval carcass4 10 of 4 1.98None
S2 cells (growing)6 10 of 4 2.83None
Whole fly2 10 of 4

Looking for FBgn0033469. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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