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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033471 through 18771 annotations produced 1 hits

/// (CG12134 /// DvirGJ21267):

Annotation Number : CG12134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033471
Gbrowse : chr2R:5858653-5860288 (+) // 100.0 //
Probeset : 1631585_a_at
Accessions : protein= NP_610542; /// NP_724865;, nucleotide= NM_136698; /// NM_165725;
FlyMine data for FBgn0033471.
BDGP gene expression has embryonic in situ data for CG12134: 4 pix of staining in 1 body parts.
BioGrid reports that CG12134 interacts with CG8506 .
VDRC has 2 RNAi stocks for FBgn0033471 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.30Down
Head45 14 of 4 0.50Down
Eye45 14 of 4 0.54Down
Thoracicoabdominal ganglion30 24 of 4 0.40Down
Salivary gland40 23 of 4 0.48Down
Crop38 14 of 4 0.50Down
Midgut52 14 of 4 0.60Down
Tubule58 74 of 4 0.70Down
Hindgut31 14 of 4 0.40Down
Heart49 34 of 4 0.59Down
Fat body68 154 of 4 0.80None
Ovary170 54 of 4 2.00Up
Testis12 14 of 4 0.10Down
Male accessory glands65 54 of 4 0.80None
Virgin spermatheca59 24 of 4 0.70Down
Mated spermatheca86 14 of 4 1.02None
Adult carcass37 44 of 4 0.40Down
Larval CNS121 14 of 4 1.43Up
Larval Salivary gland66 64 of 4 0.78None
Larval midgut51 34 of 4 0.61Down
Larval tubule27 14 of 4 0.30Down
Larval hindgut49 14 of 4 0.59Down
Larval fat body36 44 of 4 0.40Down
Larval trachea128 144 of 4 1.52Up
Larval carcass74 114 of 4 0.88None
S2 cells (growing)83 44 of 4 0.99None
Whole fly84 54 of 4

Looking for FBgn0033471. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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