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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033475 through 18771 annotations produced 1 hits



(CG12129):

Annotation Number : CG12129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033475
Gbrowse : chr2R:5920798-5922206 (+) // 100.0 //
Probeset : 1628714_at
Accessions : protein= NP_610545;, nucleotide= NM_136701;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electro
FlyMine data for FBgn0033475.
BDGP gene expression has embryonic in situ data for CG12129: 26 pix of staining in 1 body parts.
BioGrid reports that CG12129 interacts with CG17660 CG4820 .
VDRC has 2 RNAi stocks for FBgn0033475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 ± 34 of 4 0.60Down
Head95 ± 64 of 4 0.40Down
Eye103 ± 04 of 4 0.45Down
Thoracicoabdominal ganglion127 ± 34 of 4 0.60Down
Salivary gland54 ± 24 of 4 0.24Down
Crop106 ± 04 of 4 0.50Down
Midgut48 ± 44 of 4 0.20Down
Tubule67 ± 44 of 4 0.30Down
Hindgut77 ± 34 of 4 0.30Down
Heart123 ± 44 of 4 0.53Down
Fat body115 ± 144 of 4 0.50Down
Ovary432 ± 84 of 4 1.90Up
Testis176 ± 64 of 4 0.80Down
Male accessory glands144 ± 44 of 4 0.60Down
Virgin spermatheca75 ± 24 of 4 0.33Down
Mated spermatheca91 ± 44 of 4 0.39Down
Adult carcass87 ± 24 of 4 0.40Down
Larval CNS287 ± 54 of 4 1.24Up
Larval Salivary gland135 ± 124 of 4 0.59Down
Larval midgut26 ± 04 of 4 0.11Down
Larval tubule100 ± 44 of 4 0.40Down
Larval hindgut78 ± 24 of 4 0.34Down
Larval fat body110 ± 54 of 4 0.50Down
Larval trachea230 ± 194 of 4 1.00None
Larval carcass68 ± 44 of 4 0.30Down
S2 cells (growing)309 ± 64 of 4 1.34Up
Whole fly231 ± 94 of 4

Looking for FBgn0033475. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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