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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033480 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L42 (mRpL42):

Annotation Number : CG12921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033480
Gbrowse : chr2R:5954153-5954748 (+) // 100.0 //
Probeset : 1625392_at
Accessions : protein= NP_523673;, nucleotide= NM_078949;
Pathway : 0005761 // mitochondrial ribosome // inferred from sequence or structural similarity /// 0005762 // mitochondrial large
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0033480.
BDGP gene expression has embryonic in situ data for mRpS32: 9 pix of staining in 3 body parts.
BioGrid reports that CG12921 interacts with CG6819 .
VDRC has 2 RNAi stocks for FBgn0033480 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 ± 114 of 4 0.90None
Head114 ± 144 of 4 0.70None
Eye215 ± 194 of 4 1.32None
Thoracicoabdominal ganglion137 ± 54 of 4 0.80None
Salivary gland116 ± 74 of 4 0.72None
Crop93 ± 64 of 4 0.60Down
Midgut140 ± 84 of 4 0.90None
Tubule79 ± 34 of 4 0.50Down
Hindgut175 ± 64 of 4 1.10None
Heart180 ± 134 of 4 1.11None
Fat body129 ± 204 of 4 0.80None
Ovary174 ± 84 of 4 1.10None
Testis91 ± 24 of 4 0.60Down
Male accessory glands134 ± 94 of 4 0.80None
Virgin spermatheca90 ± 24 of 4 0.56Down
Mated spermatheca80 ± 84 of 4 0.49Down
Adult carcass148 ± 84 of 4 0.90None
Larval CNS160 ± 134 of 4 0.99None
Larval Salivary gland174 ± 174 of 4 1.07None
Larval midgut78 ± 74 of 4 0.48Down
Larval tubule64 ± 14 of 4 0.40Down
Larval hindgut112 ± 24 of 4 0.69None
Larval fat body63 ± 34 of 4 0.40Down
Larval trachea193 ± 164 of 4 1.19None
Larval carcass196 ± 294 of 4 1.21None
S2 cells (growing)179 ± 44 of 4 1.10None
Whole fly162 ± 204 of 4

Looking for FBgn0033480. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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