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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033483 through 18771 annotations produced 2 hits



Eiger (egr):

Annotation Number : CG12919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033483
Gbrowse : chr2R:5970119-5971666 (+) // 100.0 //
Probeset : 1639671_at
Accessions : protein= NP_724878; /// NP_995791;, nucleotide= NM_165735; /// NM_206069;
Pathway : 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural simila
Interpro : 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005164 // tumor necrosis f
FlyMine data for FBgn0033483.
BDGP gene expression has embryonic in situ data for eiger: 63 pix of staining in 14 body parts.
BioGrid reports that CG12919 interacts with CG13458 CG9326 CG5680 CG5680 CG12284 CG12284 CG12284 CG12284 CG1857 CG1857 CG4353 CG16973 CG16973 CG6829 CG18492 CG8091 CG8091 CG6531 CG7850 CG7850 CG6531 .
VDRC has 3 RNAi stocks for FBgn0033483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 ± 44 of 4 2.60Up
Head159 ± 44 of 4 2.10Up
Eye164 ± 74 of 4 2.12Up
Thoracicoabdominal ganglion177 ± 54 of 4 2.30Up
Salivary gland287 ± 134 of 4 3.72Up
Crop143 ± 44 of 4 1.90Up
Midgut141 ± 34 of 4 1.80Up
Tubule797 ± 944 of 410.30Up
Hindgut153 ± 104 of 4 2.00Up
Heart691 ± 534 of 4 8.93Up
Fat body80 ± 114 of 4 1.04None
Ovary28 ± 24 of 4 0.40Down
Testis12 ± 14 of 4 0.20Down
Male accessory glands20 ± 22 of 4 0.30Down
Virgin spermatheca28 ± 24 of 4 0.36Down
Mated spermatheca34 ± 24 of 4 0.44Down
Adult carcass112 ± 24 of 4 1.50Up
Larval CNS278 ± 434 of 4 3.60Up
Larval Salivary gland19 ± 24 of 4 0.25Down
Larval midgut89 ± 54 of 4 1.15None
Larval tubule229 ± 74 of 4 3.00Up
Larval hindgut134 ± 54 of 4 1.73Up
Larval fat body433 ± 254 of 4 5.60Up
Larval trachea46 ± 134 of 4 0.60Down
Larval carcass98 ± 154 of 4 1.27None
S2 cells (growing)1220 ± 244 of 415.77Up
Whole fly77 ± 54 of 4



Eiger (egr):

Annotation Number : S.C2R000679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033483
Gbrowse : chr2R:5966516-5969137 (+) // 100.0 //
Probeset : 1629442_at
Accessions : protein= NP_724878; /// NP_995791;, nucleotide= NM_165735; /// NM_206069;
Pathway : 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural simila
Interpro : 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005164 // tumor necrosis f
FlyMine data for FBgn0033483.
BDGP gene expression has embryonic in situ data for eiger: 63 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0033483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 04 of 4 3.60Up
Head32 ± 34 of 4 2.00Up
Eye18 ± 04 of 4 1.17None
Thoracicoabdominal ganglion25 ± 14 of 4 1.60Up
Salivary gland63 ± 54 of 4 3.98Up
Crop36 ± 54 of 4 2.30Up
Midgut25 ± 24 of 4 1.60Up
Tubule130 ± 114 of 4 8.30Up
Hindgut43 ± 24 of 4 2.80Up
Heart83 ± 54 of 4 5.26Up
Fat body9 ± 20 of 4 0.59None
Ovary3 ± 10 of 4 0.20Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.11Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass20 ± 31 of 4 1.30None
Larval CNS44 ± 44 of 4 2.84Up
Larval Salivary gland1 ± 00 of 4 0.10Down
Larval midgut4 ± 10 of 4 0.27Down
Larval tubule64 ± 34 of 4 4.10Up
Larval hindgut13 ± 11 of 4 0.87None
Larval fat body141 ± 104 of 4 8.90Up
Larval trachea3 ± 00 of 4 0.20Down
Larval carcass7 ± 20 of 4 0.47None
S2 cells (growing)456 ± 74 of 428.87Up
Whole fly15 ± 31 of 4

Looking for FBgn0033483. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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