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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033485 through 18771 annotations produced 1 hits



Ribosomal protein LP0-like (RpLP0-like):

Annotation Number : CG1381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033485
Gbrowse : chr2R:5986020-5987091 (-) // 100.0 //
Probeset : 1632263_at
Accessions : protein= NP_610554;, nucleotide= NM_136710;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
FlyMine data for FBgn0033485.
BDGP gene expression has embryonic in situ data for CG1381: 11 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0033485 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 54 of 4 0.30Down
Head104 64 of 4 0.60Down
Eye59 04 of 4 0.35Down
Thoracicoabdominal ganglion82 14 of 4 0.50Down
Salivary gland98 74 of 4 0.59Down
Crop118 34 of 4 0.70None
Midgut138 124 of 4 0.80None
Tubule100 74 of 4 0.60Down
Hindgut103 54 of 4 0.60Down
Heart137 24 of 4 0.82None
Fat body174 134 of 4 1.04None
Ovary300 34 of 4 1.80Up
Testis33 14 of 4 0.20Down
Male accessory glands195 74 of 4 1.20None
Virgin spermatheca99 64 of 4 0.59Down
Mated spermatheca139 104 of 4 0.83None
Adult carcass115 34 of 4 0.70Down
Larval CNS230 114 of 4 1.37Up
Larval Salivary gland149 84 of 4 0.89None
Larval midgut73 124 of 4 0.44Down
Larval tubule45 44 of 4 0.30Down
Larval hindgut118 154 of 4 0.71None
Larval fat body37 34 of 4 0.20Down
Larval trachea285 644 of 4 1.70Up
Larval carcass186 374 of 4 1.11None
S2 cells (growing)264 64 of 4 1.58Up
Whole fly167 164 of 4

Looking for FBgn0033485. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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