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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033486 through 18771 annotations produced 1 hits



(CG11866):

Annotation Number : CG11866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033486
Gbrowse : chr2R:6005197-6008964 (+) // 100.0 //
Probeset : 1636628_at
Accessions : protein= NP_610555;, nucleotide= NM_136711;
FlyMine data for FBgn0033486.
TRiP has 1 RNAi stocks for FBgn0033486 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain298 74 of 4 1.50Up
Head177 94 of 4 0.90None
Eye466 104 of 4 2.31Up
Thoracicoabdominal ganglion237 164 of 4 1.20None
Salivary gland227 164 of 4 1.13None
Crop177 44 of 4 0.90None
Midgut96 14 of 4 0.50Down
Tubule120 54 of 4 0.60Down
Hindgut142 54 of 4 0.70Down
Heart193 64 of 4 0.96None
Fat body103 134 of 4 0.51Down
Ovary358 84 of 4 1.80Up
Testis228 64 of 4 1.10None
Male accessory glands251 154 of 4 1.20None
Virgin spermatheca90 34 of 4 0.45Down
Mated spermatheca88 64 of 4 0.44Down
Adult carcass111 114 of 4 0.60Down
Larval CNS377 134 of 4 1.87Up
Larval Salivary gland184 144 of 4 0.91None
Larval midgut64 54 of 4 0.32Down
Larval tubule201 74 of 4 1.00None
Larval hindgut116 24 of 4 0.58Down
Larval fat body147 204 of 4 0.70None
Larval trachea217 164 of 4 1.08None
Larval carcass101 44 of 4 0.50Down
S2 cells (growing)201 44 of 4 1.00None
Whole fly201 164 of 4

Looking for FBgn0033486. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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