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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033491 through 18771 annotations produced 1 hits



(CG18011):

Annotation Number : CG18011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033491
Gbrowse : chr2R:6029844-6033717 (+) // 100.0 //
Probeset : 1634853_at
Accessions : protein= NP_610559;, nucleotide= NM_136715;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033491.
Homophila reports that CG18011 is a close match (4e-11) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG18011 interacts with CG5303 .
VDRC has 2 RNAi stocks for FBgn0033491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 1.50Up
Head10 ± 13 of 4 0.90None
Eye11 ± 03 of 4 1.01None
Thoracicoabdominal ganglion13 ± 13 of 4 1.20None
Salivary gland12 ± 40 of 4 1.17None
Crop14 ± 34 of 4 1.30None
Midgut13 ± 13 of 4 1.20None
Tubule7 ± 02 of 4 0.70Down
Hindgut12 ± 12 of 4 1.10None
Heart5 ± 10 of 4 0.53Down
Fat body10 ± 14 of 4 0.92None
Ovary31 ± 14 of 4 2.90Up
Testis17 ± 14 of 4 1.50Up
Male accessory glands9 ± 00 of 4 0.80None
Virgin spermatheca6 ± 20 of 4 0.60None
Mated spermatheca8 ± 10 of 4 0.79None
Adult carcass7 ± 20 of 4 0.70None
Larval CNS21 ± 44 of 4 1.94Up
Larval Salivary gland16 ± 12 of 4 1.51Up
Larval midgut5 ± 22 of 4 0.54None
Larval tubule10 ± 23 of 4 0.90None
Larval hindgut12 ± 14 of 4 1.14None
Larval fat body8 ± 20 of 4 0.80None
Larval trachea12 ± 32 of 4 1.10None
Larval carcass10 ± 22 of 4 0.99None
S2 cells (growing)21 ± 14 of 4 1.94Up
Whole fly11 ± 04 of 4

Looking for FBgn0033491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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