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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033497 through 18771 annotations produced 1 hits


Annotation Number : CG12912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033497
Gbrowse : chr2R:6121378-6121717 (-) // 100.0 //
Probeset : 1628737_at
Accessions : protein= NP_610564;, nucleotide= NM_136720;
FlyMine data for FBgn0033497.
VDRC has 2 RNAi stocks for FBgn0033497 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 24 of 452.10Up
Head2 10 of 4 2.60None
Eye5 22 of 4 7.87None
Thoracicoabdominal ganglion14 33 of 419.30Up
Salivary gland3 10 of 4 5.00None
Crop3 10 of 4 4.00None
Midgut1 00 of 4 2.10None
Tubule1 00 of 4 1.50None
Hindgut0 00 of 4 0.90None
Heart0 00 of 4 0.77None
Fat body3 40 of 4 4.53None
Ovary0 00 of 4 0.70None
Testis2 00 of 4 2.70None
Male accessory glands5 10 of 4 6.90Up
Virgin spermatheca2 10 of 4 3.40None
Mated spermatheca2 10 of 4 3.57None
Adult carcass3 20 of 4 5.00None
Larval CNS3 30 of 4 4.97None
Larval Salivary gland3 10 of 4 4.10None
Larval midgut4 10 of 4 5.80None
Larval tubule0 00 of 4 0.90None
Larval hindgut1 00 of 4 1.33None
Larval fat body1 00 of 4 1.80None
Larval trachea6 21 of 4 8.63Up
Larval carcass0 00 of 4 1.23None
S2 cells (growing)1 10 of 4 2.27None
Whole fly0 00 of 4

Looking for FBgn0033497. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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