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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033499 through 18771 annotations produced 1 hits



(CG12914):

Annotation Number : CG12914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033499
Gbrowse : chr2R:6135636-6136665 (+) // 100.0 //
Probeset : 1638988_at
Accessions : protein= NP_610566;, nucleotide= NM_136722;
FlyMine data for FBgn0033499.
BioGrid reports that CG12914 interacts with CG4771 .
VDRC has 2 RNAi stocks for FBgn0033499 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head0 00 of 4 0.00Down
Eye0 00 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland5 10 of 4 0.28Down
Crop1 00 of 4 0.10Down
Midgut5 20 of 4 0.30Down
Tubule4 00 of 4 0.20Down
Hindgut2 00 of 4 0.10Down
Heart0 00 of 4 0.04Down
Fat body2 30 of 4 0.12Down
Ovary1 10 of 4 0.10Down
Testis287 94 of 415.00Up
Male accessory glands4 10 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.09Down
Mated spermatheca2 10 of 4 0.12Down
Adult carcass4 20 of 4 0.30Down
Larval CNS0 00 of 4 0.04Down
Larval Salivary gland2 10 of 4 0.10Down
Larval midgut3 00 of 4 0.16Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut1 00 of 4 0.07Down
Larval fat body28 102 of 4 1.50None
Larval trachea1 20 of 4 0.09Down
Larval carcass1 00 of 4 0.09Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly19 04 of 4

Looking for FBgn0033499. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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