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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033501 through 18771 annotations produced 1 hits



(CG12911):

Annotation Number : CG12911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033501
Gbrowse : chr2R:6144193-6148781 (+) // 100.0 //
Probeset : 1631730_at
Accessions : protein= NP_001137635; /// NP_610568;, nucleotide= NM_001144163; /// NM_136724;
FlyMine data for FBgn0033501.
BDGP gene expression has embryonic in situ data for CG12911: 25 pix of staining in 8 body parts.
VDRC has 2 RNAi stocks for FBgn0033501 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30None
Head1 ± 00 of 4 0.60None
Eye1 ± 00 of 4 0.57None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland8 ± 10 of 4 4.24Up
Crop1 ± 00 of 4 1.00None
Midgut1 ± 00 of 4 1.00None
Tubule2 ± 00 of 4 1.50None
Hindgut1 ± 00 of 4 0.70None
Heart2 ± 10 of 4 1.32None
Fat body0 ± 00 of 4 0.47None
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.60None
Male accessory glands43 ± 44 of 422.90Up
Virgin spermatheca4 ± 10 of 4 2.37None
Mated spermatheca3 ± 10 of 4 1.86None
Adult carcass1 ± 00 of 4 0.80None
Larval CNS0 ± 00 of 4 0.34None
Larval Salivary gland0 ± 00 of 4 0.39None
Larval midgut3 ± 10 of 4 1.64None
Larval tubule2 ± 10 of 4 1.20None
Larval hindgut2 ± 10 of 4 1.21None
Larval fat body1 ± 00 of 4 0.70None
Larval trachea5 ± 30 of 4 3.00None
Larval carcass9 ± 10 of 4 4.78Up
S2 cells (growing)1 ± 00 of 4 0.55None
Whole fly1 ± 00 of 4

Looking for FBgn0033501. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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