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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033502 through 18771 annotations produced 1 hits


Annotation Number : CG12910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033502
Gbrowse : chr2R:6154373-6156712 (+) // 100.0 //
Probeset : 1636009_at
Accessions : protein= NP_610569;, nucleotide= NM_136725;
FlyMine data for FBgn0033502.
VDRC has 2 RNAi stocks for FBgn0033502 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 14 of 4 1.40None
Head68 64 of 4 2.10Up
Eye185 104 of 4 5.81Up
Thoracicoabdominal ganglion59 14 of 4 1.90Up
Salivary gland20 70 of 4 0.63None
Crop35 14 of 4 1.10None
Midgut273 174 of 4 8.60Up
Tubule168 94 of 4 5.30Up
Hindgut55 24 of 4 1.70Up
Heart16 14 of 4 0.53None
Fat body46 94 of 4 1.44None
Ovary11 22 of 4 0.40Down
Testis2 00 of 4 0.10Down
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca56 64 of 4 1.77Up
Mated spermatheca44 103 of 4 1.38None
Adult carcass23 22 of 4 0.70None
Larval CNS31 44 of 4 0.98None
Larval Salivary gland11 20 of 4 0.34Down
Larval midgut268 144 of 4 8.40Up
Larval tubule183 334 of 4 5.70Up
Larval hindgut96 84 of 4 3.02Up
Larval fat body7 10 of 4 0.20Down
Larval trachea10 44 of 4 0.32Down
Larval carcass296 334 of 4 9.28Up
S2 cells (growing)4 10 of 4 0.13Down
Whole fly32 64 of 4

Looking for FBgn0033502. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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