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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033507 through 18771 annotations produced 1 hits


Annotation Number : CG12909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033507
Gbrowse : chr2R:6197628-6198650 (+) // 100.0 //
Probeset : 1628180_at
Accessions : protein= NP_610573;, nucleotide= NM_136729;
Pathway : 0005730 // nucleolus // inferred from sequence or structural similarity
FlyMine data for FBgn0033507.
BDGP gene expression has embryonic in situ data for CG12909: 19 pix of staining in 19 body parts.
TRiP has 1 RNAi stocks for FBgn0033507 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033507 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 24 of 4 0.20Down
Head33 24 of 4 0.20Down
Eye28 23 of 4 0.18Down
Thoracicoabdominal ganglion26 42 of 4 0.20Down
Salivary gland45 131 of 4 0.29Down
Crop47 24 of 4 0.30Down
Midgut45 50 of 4 0.30Down
Tubule40 83 of 4 0.30Down
Hindgut28 12 of 4 0.20Down
Heart25 14 of 4 0.16Down
Fat body45 94 of 4 0.29Down
Ovary282 14 of 4 1.80Up
Testis40 32 of 4 0.30Down
Male accessory glands126 74 of 4 0.80None
Virgin spermatheca62 43 of 4 0.41Down
Mated spermatheca87 64 of 4 0.56Down
Adult carcass39 52 of 4 0.30Down
Larval CNS141 124 of 4 0.92None
Larval Salivary gland98 94 of 4 0.63Down
Larval midgut55 30 of 4 0.36Down
Larval tubule21 01 of 4 0.10Down
Larval hindgut62 104 of 4 0.41Down
Larval fat body23 32 of 4 0.20Down
Larval trachea110 104 of 4 0.72Down
Larval carcass120 274 of 4 0.78None
S2 cells (growing)200 44 of 4 1.30Up
Whole fly154 104 of 4

Looking for FBgn0033507. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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