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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033512 through 18771 annotations produced 1 hits


(CG12902):

Annotation Number : CG12902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033512
Gbrowse : chr2R:6242224-6243336 (-) // 100.0 //
Probeset : 1634880_s_at
Accessions : protein= NP_610578; /// NP_724921;, nucleotide= NM_136734; /// NM_165765;
FlyMine data for FBgn0033512.
BDGP gene expression has embryonic in situ data for CG12902: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.00Down
Salivary gland4 ± 30 of 4 0.01Down
Crop5 ± 20 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut4 ± 20 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body0 ± 00 of 4 0.00Down
Ovary2 ± 10 of 4 0.00Down
Testis2715 ± 774 of 4 4.40Up
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca4 ± 21 of 4 0.01Down
Adult carcass16 ± 43 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland4 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.01Down
Larval fat body524 ± 2674 of 4 0.80None
Larval trachea24 ± 451 of 4 0.04Down
Larval carcass2 ± 10 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly619 ± 344 of 4

Looking for FBgn0033512. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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